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The Decision Decoding ToolBOX (DDTBOX) – A Multivariate Pattern Analysis Toolbox for Event-Related Potentials
In recent years, neuroimaging research in cognitive neuroscience has increasingly used multivariate pattern analysis (MVPA) to investigate higher cognitive functions. Here we present DDTBOX, an open-source MVPA toolbox for electroencephalography (EEG) data. DDTBOX runs under MATLAB and is well integ...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6394452/ https://www.ncbi.nlm.nih.gov/pubmed/29721680 http://dx.doi.org/10.1007/s12021-018-9375-z |
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author | Bode, Stefan Feuerriegel, Daniel Bennett, Daniel Alday, Phillip M. |
author_facet | Bode, Stefan Feuerriegel, Daniel Bennett, Daniel Alday, Phillip M. |
author_sort | Bode, Stefan |
collection | PubMed |
description | In recent years, neuroimaging research in cognitive neuroscience has increasingly used multivariate pattern analysis (MVPA) to investigate higher cognitive functions. Here we present DDTBOX, an open-source MVPA toolbox for electroencephalography (EEG) data. DDTBOX runs under MATLAB and is well integrated with the EEGLAB/ERPLAB and Fieldtrip toolboxes (Delorme and Makeig 2004; Lopez-Calderon and Luck 2014; Oostenveld et al. 2011). It trains support vector machines (SVMs) on patterns of event-related potential (ERP) amplitude data, following or preceding an event of interest, for classification or regression of experimental variables. These amplitude patterns can be extracted across space/electrodes (spatial decoding), time (temporal decoding), or both (spatiotemporal decoding). DDTBOX can also extract SVM feature weights, generate empirical chance distributions based on shuffled-labels decoding for group-level statistical testing, provide estimates of the prevalence of decodable information in the population, and perform a variety of corrections for multiple comparisons. It also includes plotting functions for single subject and group results. DDTBOX complements conventional analyses of ERP components, as subtle multivariate patterns can be detected that would be overlooked in standard analyses. It further allows for a more explorative search for information when no ERP component is known to be specifically linked to a cognitive process of interest. In summary, DDTBOX is an easy-to-use and open-source toolbox that allows for characterising the time-course of information related to various perceptual and cognitive processes. It can be applied to data from a large number of experimental paradigms and could therefore be a valuable tool for the neuroimaging community. |
format | Online Article Text |
id | pubmed-6394452 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-63944522019-03-15 The Decision Decoding ToolBOX (DDTBOX) – A Multivariate Pattern Analysis Toolbox for Event-Related Potentials Bode, Stefan Feuerriegel, Daniel Bennett, Daniel Alday, Phillip M. Neuroinformatics Software Original Article In recent years, neuroimaging research in cognitive neuroscience has increasingly used multivariate pattern analysis (MVPA) to investigate higher cognitive functions. Here we present DDTBOX, an open-source MVPA toolbox for electroencephalography (EEG) data. DDTBOX runs under MATLAB and is well integrated with the EEGLAB/ERPLAB and Fieldtrip toolboxes (Delorme and Makeig 2004; Lopez-Calderon and Luck 2014; Oostenveld et al. 2011). It trains support vector machines (SVMs) on patterns of event-related potential (ERP) amplitude data, following or preceding an event of interest, for classification or regression of experimental variables. These amplitude patterns can be extracted across space/electrodes (spatial decoding), time (temporal decoding), or both (spatiotemporal decoding). DDTBOX can also extract SVM feature weights, generate empirical chance distributions based on shuffled-labels decoding for group-level statistical testing, provide estimates of the prevalence of decodable information in the population, and perform a variety of corrections for multiple comparisons. It also includes plotting functions for single subject and group results. DDTBOX complements conventional analyses of ERP components, as subtle multivariate patterns can be detected that would be overlooked in standard analyses. It further allows for a more explorative search for information when no ERP component is known to be specifically linked to a cognitive process of interest. In summary, DDTBOX is an easy-to-use and open-source toolbox that allows for characterising the time-course of information related to various perceptual and cognitive processes. It can be applied to data from a large number of experimental paradigms and could therefore be a valuable tool for the neuroimaging community. Springer US 2018-05-02 2019 /pmc/articles/PMC6394452/ /pubmed/29721680 http://dx.doi.org/10.1007/s12021-018-9375-z Text en © The Author(s) 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Software Original Article Bode, Stefan Feuerriegel, Daniel Bennett, Daniel Alday, Phillip M. The Decision Decoding ToolBOX (DDTBOX) – A Multivariate Pattern Analysis Toolbox for Event-Related Potentials |
title | The Decision Decoding ToolBOX (DDTBOX) – A Multivariate Pattern Analysis Toolbox for Event-Related Potentials |
title_full | The Decision Decoding ToolBOX (DDTBOX) – A Multivariate Pattern Analysis Toolbox for Event-Related Potentials |
title_fullStr | The Decision Decoding ToolBOX (DDTBOX) – A Multivariate Pattern Analysis Toolbox for Event-Related Potentials |
title_full_unstemmed | The Decision Decoding ToolBOX (DDTBOX) – A Multivariate Pattern Analysis Toolbox for Event-Related Potentials |
title_short | The Decision Decoding ToolBOX (DDTBOX) – A Multivariate Pattern Analysis Toolbox for Event-Related Potentials |
title_sort | decision decoding toolbox (ddtbox) – a multivariate pattern analysis toolbox for event-related potentials |
topic | Software Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6394452/ https://www.ncbi.nlm.nih.gov/pubmed/29721680 http://dx.doi.org/10.1007/s12021-018-9375-z |
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