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Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding

Recent next generation sequencing-driven mass production of genomic data and multi-omics-integrated approaches have significantly contributed to broadening and deepening our knowledge on the molecular system of living organisms. Accordingly, translational genomics (TG) approach can play a pivotal ro...

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Autor principal: Choi, Hong-Kyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Singapore 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6394800/
https://www.ncbi.nlm.nih.gov/pubmed/30353370
http://dx.doi.org/10.1007/s13258-018-0751-8
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author Choi, Hong-Kyu
author_facet Choi, Hong-Kyu
author_sort Choi, Hong-Kyu
collection PubMed
description Recent next generation sequencing-driven mass production of genomic data and multi-omics-integrated approaches have significantly contributed to broadening and deepening our knowledge on the molecular system of living organisms. Accordingly, translational genomics (TG) approach can play a pivotal role in creating an informational bridge between model systems and relatively less studied plants. This review focuses mainly on addressing recent advancement in omics-related technologies, a diverse array of bioinformatic resources and potential applications of TG for the crop breeding. To accomplish above objectives, information on omics data production, various DBs and high throughput technologies was collected, integrated, and used to analyze current status and future perspectives towards omics-assisted crop breeding. Various omics data and resources have been organized and integrated into the databases and/or bioinformatic infrastructures, and thereby serve as the ome’s information center for cross-genome translation of biological data. Although the size of accumulated omics data and availability of reference genomes are different among plant families, translational approaches have been actively progressing to access particular biological characteristics. When multi-layered omics data are integrated in a synthetic manner, it will allow providing a stereoscopic view of dynamic molecular behavior and interacting networks of genes occurring in plants. Consequently, TG approach will lead us to broader and deeper insights into target traits for the plant breeding. Furthermore, such systems approach will renovate conventional breeding programs and accelerate precision crop breeding in the future.
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spelling pubmed-63948002019-03-15 Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding Choi, Hong-Kyu Genes Genomics Review Recent next generation sequencing-driven mass production of genomic data and multi-omics-integrated approaches have significantly contributed to broadening and deepening our knowledge on the molecular system of living organisms. Accordingly, translational genomics (TG) approach can play a pivotal role in creating an informational bridge between model systems and relatively less studied plants. This review focuses mainly on addressing recent advancement in omics-related technologies, a diverse array of bioinformatic resources and potential applications of TG for the crop breeding. To accomplish above objectives, information on omics data production, various DBs and high throughput technologies was collected, integrated, and used to analyze current status and future perspectives towards omics-assisted crop breeding. Various omics data and resources have been organized and integrated into the databases and/or bioinformatic infrastructures, and thereby serve as the ome’s information center for cross-genome translation of biological data. Although the size of accumulated omics data and availability of reference genomes are different among plant families, translational approaches have been actively progressing to access particular biological characteristics. When multi-layered omics data are integrated in a synthetic manner, it will allow providing a stereoscopic view of dynamic molecular behavior and interacting networks of genes occurring in plants. Consequently, TG approach will lead us to broader and deeper insights into target traits for the plant breeding. Furthermore, such systems approach will renovate conventional breeding programs and accelerate precision crop breeding in the future. Springer Singapore 2018-10-23 2019 /pmc/articles/PMC6394800/ /pubmed/30353370 http://dx.doi.org/10.1007/s13258-018-0751-8 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Review
Choi, Hong-Kyu
Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
title Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
title_full Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
title_fullStr Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
title_full_unstemmed Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
title_short Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
title_sort translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6394800/
https://www.ncbi.nlm.nih.gov/pubmed/30353370
http://dx.doi.org/10.1007/s13258-018-0751-8
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