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Visualization of currents in neural models with similar behavior and different conductance densities

Conductance-based models of neural activity produce large amounts of data that can be hard to visualize and interpret. We introduce visualization methods to display the dynamics of the ionic currents and to display the models’ response to perturbations. To visualize the currents’ dynamics, we comput...

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Detalles Bibliográficos
Autores principales: Alonso, Leandro M, Marder, Eve
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395073/
https://www.ncbi.nlm.nih.gov/pubmed/30702427
http://dx.doi.org/10.7554/eLife.42722
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author Alonso, Leandro M
Marder, Eve
author_facet Alonso, Leandro M
Marder, Eve
author_sort Alonso, Leandro M
collection PubMed
description Conductance-based models of neural activity produce large amounts of data that can be hard to visualize and interpret. We introduce visualization methods to display the dynamics of the ionic currents and to display the models’ response to perturbations. To visualize the currents’ dynamics, we compute the percent contribution of each current and display them over time using stacked-area plots. The waveform of the membrane potential and the contribution of each current change as the models are perturbed. To represent these changes over a range of the perturbation control parameter, we compute and display the distributions of these waveforms. We illustrate these procedures in six examples of bursting model neurons with similar activity but that differ as much as threefold in their conductance densities. These visualization methods provide heuristic insight into why individual neurons or networks with similar behavior can respond widely differently to perturbations.
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spelling pubmed-63950732019-03-04 Visualization of currents in neural models with similar behavior and different conductance densities Alonso, Leandro M Marder, Eve eLife Neuroscience Conductance-based models of neural activity produce large amounts of data that can be hard to visualize and interpret. We introduce visualization methods to display the dynamics of the ionic currents and to display the models’ response to perturbations. To visualize the currents’ dynamics, we compute the percent contribution of each current and display them over time using stacked-area plots. The waveform of the membrane potential and the contribution of each current change as the models are perturbed. To represent these changes over a range of the perturbation control parameter, we compute and display the distributions of these waveforms. We illustrate these procedures in six examples of bursting model neurons with similar activity but that differ as much as threefold in their conductance densities. These visualization methods provide heuristic insight into why individual neurons or networks with similar behavior can respond widely differently to perturbations. eLife Sciences Publications, Ltd 2019-01-31 /pmc/articles/PMC6395073/ /pubmed/30702427 http://dx.doi.org/10.7554/eLife.42722 Text en © 2019, Alonso and Marder http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Neuroscience
Alonso, Leandro M
Marder, Eve
Visualization of currents in neural models with similar behavior and different conductance densities
title Visualization of currents in neural models with similar behavior and different conductance densities
title_full Visualization of currents in neural models with similar behavior and different conductance densities
title_fullStr Visualization of currents in neural models with similar behavior and different conductance densities
title_full_unstemmed Visualization of currents in neural models with similar behavior and different conductance densities
title_short Visualization of currents in neural models with similar behavior and different conductance densities
title_sort visualization of currents in neural models with similar behavior and different conductance densities
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395073/
https://www.ncbi.nlm.nih.gov/pubmed/30702427
http://dx.doi.org/10.7554/eLife.42722
work_keys_str_mv AT alonsoleandrom visualizationofcurrentsinneuralmodelswithsimilarbehavioranddifferentconductancedensities
AT mardereve visualizationofcurrentsinneuralmodelswithsimilarbehavioranddifferentconductancedensities