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Visualization of currents in neural models with similar behavior and different conductance densities
Conductance-based models of neural activity produce large amounts of data that can be hard to visualize and interpret. We introduce visualization methods to display the dynamics of the ionic currents and to display the models’ response to perturbations. To visualize the currents’ dynamics, we comput...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395073/ https://www.ncbi.nlm.nih.gov/pubmed/30702427 http://dx.doi.org/10.7554/eLife.42722 |
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author | Alonso, Leandro M Marder, Eve |
author_facet | Alonso, Leandro M Marder, Eve |
author_sort | Alonso, Leandro M |
collection | PubMed |
description | Conductance-based models of neural activity produce large amounts of data that can be hard to visualize and interpret. We introduce visualization methods to display the dynamics of the ionic currents and to display the models’ response to perturbations. To visualize the currents’ dynamics, we compute the percent contribution of each current and display them over time using stacked-area plots. The waveform of the membrane potential and the contribution of each current change as the models are perturbed. To represent these changes over a range of the perturbation control parameter, we compute and display the distributions of these waveforms. We illustrate these procedures in six examples of bursting model neurons with similar activity but that differ as much as threefold in their conductance densities. These visualization methods provide heuristic insight into why individual neurons or networks with similar behavior can respond widely differently to perturbations. |
format | Online Article Text |
id | pubmed-6395073 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-63950732019-03-04 Visualization of currents in neural models with similar behavior and different conductance densities Alonso, Leandro M Marder, Eve eLife Neuroscience Conductance-based models of neural activity produce large amounts of data that can be hard to visualize and interpret. We introduce visualization methods to display the dynamics of the ionic currents and to display the models’ response to perturbations. To visualize the currents’ dynamics, we compute the percent contribution of each current and display them over time using stacked-area plots. The waveform of the membrane potential and the contribution of each current change as the models are perturbed. To represent these changes over a range of the perturbation control parameter, we compute and display the distributions of these waveforms. We illustrate these procedures in six examples of bursting model neurons with similar activity but that differ as much as threefold in their conductance densities. These visualization methods provide heuristic insight into why individual neurons or networks with similar behavior can respond widely differently to perturbations. eLife Sciences Publications, Ltd 2019-01-31 /pmc/articles/PMC6395073/ /pubmed/30702427 http://dx.doi.org/10.7554/eLife.42722 Text en © 2019, Alonso and Marder http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Neuroscience Alonso, Leandro M Marder, Eve Visualization of currents in neural models with similar behavior and different conductance densities |
title | Visualization of currents in neural models with similar behavior and different conductance densities |
title_full | Visualization of currents in neural models with similar behavior and different conductance densities |
title_fullStr | Visualization of currents in neural models with similar behavior and different conductance densities |
title_full_unstemmed | Visualization of currents in neural models with similar behavior and different conductance densities |
title_short | Visualization of currents in neural models with similar behavior and different conductance densities |
title_sort | visualization of currents in neural models with similar behavior and different conductance densities |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395073/ https://www.ncbi.nlm.nih.gov/pubmed/30702427 http://dx.doi.org/10.7554/eLife.42722 |
work_keys_str_mv | AT alonsoleandrom visualizationofcurrentsinneuralmodelswithsimilarbehavioranddifferentconductancedensities AT mardereve visualizationofcurrentsinneuralmodelswithsimilarbehavioranddifferentconductancedensities |