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Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit
To decipher the transcriptomic regulation of the on-tree fruit maturation in pear cv. ‘Abate Fetel’, a RNA-seq transcription analysis identified 8939 genes differentially expressed across four harvesting stages. These genes were grouped into 11 SOTA clusters based on their transcriptional pattern, o...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395599/ https://www.ncbi.nlm.nih.gov/pubmed/30854209 http://dx.doi.org/10.1038/s41438-018-0115-1 |
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author | Busatto, Nicola Farneti, Brian Tadiello, Alice Oberkofler, Vicky Cellini, Antonio Biasioli, Franco Delledonne, Massimo Cestaro, Alessandro Noutsos, Christos Costa, Fabrizio |
author_facet | Busatto, Nicola Farneti, Brian Tadiello, Alice Oberkofler, Vicky Cellini, Antonio Biasioli, Franco Delledonne, Massimo Cestaro, Alessandro Noutsos, Christos Costa, Fabrizio |
author_sort | Busatto, Nicola |
collection | PubMed |
description | To decipher the transcriptomic regulation of the on-tree fruit maturation in pear cv. ‘Abate Fetel’, a RNA-seq transcription analysis identified 8939 genes differentially expressed across four harvesting stages. These genes were grouped into 11 SOTA clusters based on their transcriptional pattern, of which three included genes upregulated while the other four were represented by downregulated genes. Fruit ripening was furthermore investigated after 1 month of postharvest cold storage. The most important variation in fruit firmness, production of ethylene and volatile organic compounds were observed after 5 days of shelf-life at room temperature following cold storage. The role of ethylene in controlling the ripening of ‘Abate Fetel’ pears was furthermore investigated through the application of 1-methylcyclopropene, which efficiently delayed the progression of ripening by reducing fruit softening and repressing both ethylene and volatile production. The physiological response of the interference at the ethylene receptor level was moreover unraveled investigating the expression pattern of 12 candidate genes, initially selected to validate the RNA-seq profile. This analysis confirmed the effective role of the ethylene competitor in downregulating the expression of cell wall (PG) and ethylene-related genes (ACS, ACO, ERS1, and ERS2), as well as inducing one element involved in the auxin signaling pathway (Aux/IAA), highlighting a possible cross-talk between these two hormones. The expression patterns of these six elements suggest their use as molecular toolkit to monitor at molecular level the progression of the fruit on-tree maturation and postharvest ripening. |
format | Online Article Text |
id | pubmed-6395599 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-63955992019-03-08 Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit Busatto, Nicola Farneti, Brian Tadiello, Alice Oberkofler, Vicky Cellini, Antonio Biasioli, Franco Delledonne, Massimo Cestaro, Alessandro Noutsos, Christos Costa, Fabrizio Hortic Res Article To decipher the transcriptomic regulation of the on-tree fruit maturation in pear cv. ‘Abate Fetel’, a RNA-seq transcription analysis identified 8939 genes differentially expressed across four harvesting stages. These genes were grouped into 11 SOTA clusters based on their transcriptional pattern, of which three included genes upregulated while the other four were represented by downregulated genes. Fruit ripening was furthermore investigated after 1 month of postharvest cold storage. The most important variation in fruit firmness, production of ethylene and volatile organic compounds were observed after 5 days of shelf-life at room temperature following cold storage. The role of ethylene in controlling the ripening of ‘Abate Fetel’ pears was furthermore investigated through the application of 1-methylcyclopropene, which efficiently delayed the progression of ripening by reducing fruit softening and repressing both ethylene and volatile production. The physiological response of the interference at the ethylene receptor level was moreover unraveled investigating the expression pattern of 12 candidate genes, initially selected to validate the RNA-seq profile. This analysis confirmed the effective role of the ethylene competitor in downregulating the expression of cell wall (PG) and ethylene-related genes (ACS, ACO, ERS1, and ERS2), as well as inducing one element involved in the auxin signaling pathway (Aux/IAA), highlighting a possible cross-talk between these two hormones. The expression patterns of these six elements suggest their use as molecular toolkit to monitor at molecular level the progression of the fruit on-tree maturation and postharvest ripening. Nature Publishing Group UK 2019-03-01 /pmc/articles/PMC6395599/ /pubmed/30854209 http://dx.doi.org/10.1038/s41438-018-0115-1 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Busatto, Nicola Farneti, Brian Tadiello, Alice Oberkofler, Vicky Cellini, Antonio Biasioli, Franco Delledonne, Massimo Cestaro, Alessandro Noutsos, Christos Costa, Fabrizio Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit |
title | Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit |
title_full | Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit |
title_fullStr | Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit |
title_full_unstemmed | Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit |
title_short | Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit |
title_sort | wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘abate fetel’ pear fruit |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395599/ https://www.ncbi.nlm.nih.gov/pubmed/30854209 http://dx.doi.org/10.1038/s41438-018-0115-1 |
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