Cargando…

ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity

Host directed therapies to boost immunity against infection are gaining considerable impetus following the observation that use of antibiotics has become a continuous source for the emergence of drug resistant strains of pathogens. Receptors expressed by the cells of immune system play a cardinal ro...

Descripción completa

Detalles Bibliográficos
Autores principales: Chatterjee, Deepyan, Kaur, Gurkirat, Muradia, Shilpa, Singh, Balvinder, Agrewala, Javed N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395627/
https://www.ncbi.nlm.nih.gov/pubmed/30816123
http://dx.doi.org/10.1038/s41598-018-36179-5
_version_ 1783399112265170944
author Chatterjee, Deepyan
Kaur, Gurkirat
Muradia, Shilpa
Singh, Balvinder
Agrewala, Javed N.
author_facet Chatterjee, Deepyan
Kaur, Gurkirat
Muradia, Shilpa
Singh, Balvinder
Agrewala, Javed N.
author_sort Chatterjee, Deepyan
collection PubMed
description Host directed therapies to boost immunity against infection are gaining considerable impetus following the observation that use of antibiotics has become a continuous source for the emergence of drug resistant strains of pathogens. Receptors expressed by the cells of immune system play a cardinal role in initiating sequence of events necessary to ameliorate many morbid conditions. Although, ligands for the immune receptors are available; but their use is limited due to complex structure, synthesis and cost-effectiveness. Virtual screening (VS) is an integral part of chemoinformatics and computer-aided drug design (CADD) and aims to streamline the process of drug discovery. ImmtorLig_DB is a repertoire of 5000 novel small molecules, screened from ZINC database and ranked using structure based virtual screening (SBVS) against 25 immune receptors which play a pivotal role in defending and initiating the activation of immune system. Consequently, in the current study, small molecules were screened by docking on the essential domains present on the receptors expressed by cells of immune system. The screened molecules exhibited efficacious binding to immune receptors, and indicated a possibility of discovering novel small molecules. Other features of ImmtorLig_DB include information about availability, clustering analysis, and estimation of absorption, distribution, metabolism, and excretion (ADME) properties of the screened small molecules. Structural comparisons indicate that predicted small molecules may be considered novel. Further, this repertoire is available via a searchable graphical user interface (GUI) through http://bioinfo.imtech.res.in/bvs/immtor/.
format Online
Article
Text
id pubmed-6395627
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-63956272019-03-04 ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity Chatterjee, Deepyan Kaur, Gurkirat Muradia, Shilpa Singh, Balvinder Agrewala, Javed N. Sci Rep Article Host directed therapies to boost immunity against infection are gaining considerable impetus following the observation that use of antibiotics has become a continuous source for the emergence of drug resistant strains of pathogens. Receptors expressed by the cells of immune system play a cardinal role in initiating sequence of events necessary to ameliorate many morbid conditions. Although, ligands for the immune receptors are available; but their use is limited due to complex structure, synthesis and cost-effectiveness. Virtual screening (VS) is an integral part of chemoinformatics and computer-aided drug design (CADD) and aims to streamline the process of drug discovery. ImmtorLig_DB is a repertoire of 5000 novel small molecules, screened from ZINC database and ranked using structure based virtual screening (SBVS) against 25 immune receptors which play a pivotal role in defending and initiating the activation of immune system. Consequently, in the current study, small molecules were screened by docking on the essential domains present on the receptors expressed by cells of immune system. The screened molecules exhibited efficacious binding to immune receptors, and indicated a possibility of discovering novel small molecules. Other features of ImmtorLig_DB include information about availability, clustering analysis, and estimation of absorption, distribution, metabolism, and excretion (ADME) properties of the screened small molecules. Structural comparisons indicate that predicted small molecules may be considered novel. Further, this repertoire is available via a searchable graphical user interface (GUI) through http://bioinfo.imtech.res.in/bvs/immtor/. Nature Publishing Group UK 2019-02-28 /pmc/articles/PMC6395627/ /pubmed/30816123 http://dx.doi.org/10.1038/s41598-018-36179-5 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Chatterjee, Deepyan
Kaur, Gurkirat
Muradia, Shilpa
Singh, Balvinder
Agrewala, Javed N.
ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity
title ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity
title_full ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity
title_fullStr ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity
title_full_unstemmed ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity
title_short ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity
title_sort immtorlig_db: repertoire of virtually screened small molecules against immune receptors to bolster host immunity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395627/
https://www.ncbi.nlm.nih.gov/pubmed/30816123
http://dx.doi.org/10.1038/s41598-018-36179-5
work_keys_str_mv AT chatterjeedeepyan immtorligdbrepertoireofvirtuallyscreenedsmallmoleculesagainstimmunereceptorstobolsterhostimmunity
AT kaurgurkirat immtorligdbrepertoireofvirtuallyscreenedsmallmoleculesagainstimmunereceptorstobolsterhostimmunity
AT muradiashilpa immtorligdbrepertoireofvirtuallyscreenedsmallmoleculesagainstimmunereceptorstobolsterhostimmunity
AT singhbalvinder immtorligdbrepertoireofvirtuallyscreenedsmallmoleculesagainstimmunereceptorstobolsterhostimmunity
AT agrewalajavedn immtorligdbrepertoireofvirtuallyscreenedsmallmoleculesagainstimmunereceptorstobolsterhostimmunity