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MSGP: the first database of the protein components of the mammalian stress granules

In response to different stress stimuli, cells transiently form stress granules (SGs) in order to protect themselves and re-establish homeostasis. Besides these important cellular functions, SGs are now being implicated in different human diseases, such as neurodegenerative disorders and cancer. SGs...

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Detalles Bibliográficos
Autores principales: Nunes, Catarina, Mestre, Isa, Marcelo, Adriana, Koppenol, Rebekah, Matos, Carlos A, Nóbrega, Clévio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395795/
https://www.ncbi.nlm.nih.gov/pubmed/30820574
http://dx.doi.org/10.1093/database/baz031
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author Nunes, Catarina
Mestre, Isa
Marcelo, Adriana
Koppenol, Rebekah
Matos, Carlos A
Nóbrega, Clévio
author_facet Nunes, Catarina
Mestre, Isa
Marcelo, Adriana
Koppenol, Rebekah
Matos, Carlos A
Nóbrega, Clévio
author_sort Nunes, Catarina
collection PubMed
description In response to different stress stimuli, cells transiently form stress granules (SGs) in order to protect themselves and re-establish homeostasis. Besides these important cellular functions, SGs are now being implicated in different human diseases, such as neurodegenerative disorders and cancer. SGs are ribonucleoprotein granules, constituted by a variety of different types of proteins, RNAs, factors involved in translation and signaling molecules, being capable of regulating mRNA translation to facilitate stress response. However, until now a complete list of the SG components has not been available. Therefore, we aimer at identifying and linting in an open access database all the proteins described so far as components of SGs. The identification was made through an exhaustive search of studies listed in PubMed and double checked. Moreover, for each identified protein several details were also gathered from public databases, such as the molecular function, the cell types in which they were detected, the type of stress stimuli used to induce SG formation and the reference of the study describing the recruitment of the component to SGs. Expression levels in the context of different neurodegenerative diseases were also obtained and are also described in the database. The Mammalian Stress Granules Proteome is available at https://msgp.pt/, being a new and unique open access online database, the first to list all the protein components of the SGs identified so far. The database constitutes an important and valuable tool for researchers in this research area of growing interest.
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spelling pubmed-63957952019-03-05 MSGP: the first database of the protein components of the mammalian stress granules Nunes, Catarina Mestre, Isa Marcelo, Adriana Koppenol, Rebekah Matos, Carlos A Nóbrega, Clévio Database (Oxford) Original Article In response to different stress stimuli, cells transiently form stress granules (SGs) in order to protect themselves and re-establish homeostasis. Besides these important cellular functions, SGs are now being implicated in different human diseases, such as neurodegenerative disorders and cancer. SGs are ribonucleoprotein granules, constituted by a variety of different types of proteins, RNAs, factors involved in translation and signaling molecules, being capable of regulating mRNA translation to facilitate stress response. However, until now a complete list of the SG components has not been available. Therefore, we aimer at identifying and linting in an open access database all the proteins described so far as components of SGs. The identification was made through an exhaustive search of studies listed in PubMed and double checked. Moreover, for each identified protein several details were also gathered from public databases, such as the molecular function, the cell types in which they were detected, the type of stress stimuli used to induce SG formation and the reference of the study describing the recruitment of the component to SGs. Expression levels in the context of different neurodegenerative diseases were also obtained and are also described in the database. The Mammalian Stress Granules Proteome is available at https://msgp.pt/, being a new and unique open access online database, the first to list all the protein components of the SGs identified so far. The database constitutes an important and valuable tool for researchers in this research area of growing interest. Oxford University Press 2019-03-01 /pmc/articles/PMC6395795/ /pubmed/30820574 http://dx.doi.org/10.1093/database/baz031 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Nunes, Catarina
Mestre, Isa
Marcelo, Adriana
Koppenol, Rebekah
Matos, Carlos A
Nóbrega, Clévio
MSGP: the first database of the protein components of the mammalian stress granules
title MSGP: the first database of the protein components of the mammalian stress granules
title_full MSGP: the first database of the protein components of the mammalian stress granules
title_fullStr MSGP: the first database of the protein components of the mammalian stress granules
title_full_unstemmed MSGP: the first database of the protein components of the mammalian stress granules
title_short MSGP: the first database of the protein components of the mammalian stress granules
title_sort msgp: the first database of the protein components of the mammalian stress granules
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395795/
https://www.ncbi.nlm.nih.gov/pubmed/30820574
http://dx.doi.org/10.1093/database/baz031
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