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A risk score model for the prediction of osteosarcoma metastasis
Osteosarcoma is the most common primary solid malignancy of the bone, and its high mortality usually correlates with early metastasis. In this study, we developed a risk score model to help predict metastasis at the time of diagnosis. We downloaded and mined four expression profile datasets associat...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6396159/ https://www.ncbi.nlm.nih.gov/pubmed/30868060 http://dx.doi.org/10.1002/2211-5463.12592 |
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author | Dong, Siqi Huo, Hongjun Mao, Yu Li, Xin Dong, Lixin |
author_facet | Dong, Siqi Huo, Hongjun Mao, Yu Li, Xin Dong, Lixin |
author_sort | Dong, Siqi |
collection | PubMed |
description | Osteosarcoma is the most common primary solid malignancy of the bone, and its high mortality usually correlates with early metastasis. In this study, we developed a risk score model to help predict metastasis at the time of diagnosis. We downloaded and mined four expression profile datasets associated with osteosarcoma metastasis from the Gene Expression Omnibus. After data normalization, we performed LASSO logistic regression analysis together with 10‐fold cross validation using the GSE21257 dataset. A combination of eight genes (RAB1,CLEC3B,FCGBP,RNASE3,MDL1,ALOX5AP,VMO1 and ALPK3) were identified as being associated with osteosarcoma metastasis. These genes were put into a gene risk score model, and the prediction efficiency of the model was then validated using three independent datasets (GSE33383, GSE66673, and GSE49003) by plotting receiver operating characteristic curves. The expression levels of the eight genes in all datasets were shown as heatmaps, and gene ontology gene annotation and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis were performed. These eight genes play a role in cancer‐related biological processes, such as apoptosis and biosynthetic processes. Our results may aid in elucidating the possible mechanisms of osteosarcoma metastasis, and may help to facilitate the individual management of patients with osteosarcoma after treatment. |
format | Online Article Text |
id | pubmed-6396159 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63961592019-03-13 A risk score model for the prediction of osteosarcoma metastasis Dong, Siqi Huo, Hongjun Mao, Yu Li, Xin Dong, Lixin FEBS Open Bio Research Articles Osteosarcoma is the most common primary solid malignancy of the bone, and its high mortality usually correlates with early metastasis. In this study, we developed a risk score model to help predict metastasis at the time of diagnosis. We downloaded and mined four expression profile datasets associated with osteosarcoma metastasis from the Gene Expression Omnibus. After data normalization, we performed LASSO logistic regression analysis together with 10‐fold cross validation using the GSE21257 dataset. A combination of eight genes (RAB1,CLEC3B,FCGBP,RNASE3,MDL1,ALOX5AP,VMO1 and ALPK3) were identified as being associated with osteosarcoma metastasis. These genes were put into a gene risk score model, and the prediction efficiency of the model was then validated using three independent datasets (GSE33383, GSE66673, and GSE49003) by plotting receiver operating characteristic curves. The expression levels of the eight genes in all datasets were shown as heatmaps, and gene ontology gene annotation and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis were performed. These eight genes play a role in cancer‐related biological processes, such as apoptosis and biosynthetic processes. Our results may aid in elucidating the possible mechanisms of osteosarcoma metastasis, and may help to facilitate the individual management of patients with osteosarcoma after treatment. John Wiley and Sons Inc. 2019-02-02 /pmc/articles/PMC6396159/ /pubmed/30868060 http://dx.doi.org/10.1002/2211-5463.12592 Text en © 2019 The Authors. Published by FEBS Press and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Dong, Siqi Huo, Hongjun Mao, Yu Li, Xin Dong, Lixin A risk score model for the prediction of osteosarcoma metastasis |
title | A risk score model for the prediction of osteosarcoma metastasis |
title_full | A risk score model for the prediction of osteosarcoma metastasis |
title_fullStr | A risk score model for the prediction of osteosarcoma metastasis |
title_full_unstemmed | A risk score model for the prediction of osteosarcoma metastasis |
title_short | A risk score model for the prediction of osteosarcoma metastasis |
title_sort | risk score model for the prediction of osteosarcoma metastasis |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6396159/ https://www.ncbi.nlm.nih.gov/pubmed/30868060 http://dx.doi.org/10.1002/2211-5463.12592 |
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