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CO(2) adsorption in Y zeolite: a structural and dynamic view by a novel principal-component-analysis-assisted in situ single-crystal X-ray diffraction experiment
The increasing efficiency of detectors and brightness of X-rays in both laboratory and large-scale facilities allow the collection of full single-crystal X-ray data sets within minutes. The analysis of these ‘crystallographic big data’ requires new tools and approaches. To answer these needs, the us...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6396398/ https://www.ncbi.nlm.nih.gov/pubmed/30821256 http://dx.doi.org/10.1107/S2053273318017618 |
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author | Conterosito, Eleonora Palin, Luca Caliandro, Rocco van Beek, Wouter Chernyshov, Dmitry Milanesio, Marco |
author_facet | Conterosito, Eleonora Palin, Luca Caliandro, Rocco van Beek, Wouter Chernyshov, Dmitry Milanesio, Marco |
author_sort | Conterosito, Eleonora |
collection | PubMed |
description | The increasing efficiency of detectors and brightness of X-rays in both laboratory and large-scale facilities allow the collection of full single-crystal X-ray data sets within minutes. The analysis of these ‘crystallographic big data’ requires new tools and approaches. To answer these needs, the use of principal component analysis (PCA) is proposed to improve the efficiency and speed of the analysis. Potentialities and limitations of PCA were investigated using single-crystal X-ray diffraction (XRD) data collected in situ on Y zeolite, in which CO(2), acting as an active species, is thermally adsorbed while cooling from 300 to 200 K. For the first time, thanks to the high sensitivity of single-crystal XRD, it was possible to determine the sites where CO(2) is adsorbed, the increase in their occupancy while the temperature is decreased, and the correlated motion of active species, i.e. CO(2), H(2)O and Na(+). PCA allowed identification and elimination of problematic data sets, and better understanding of the trends of the occupancies of CO(2), Na(+) and water. The quality of the data allowed for the first time calculation of the enthalpy (ΔH) and entropy (ΔS) of the CO(2) adsorption by applying the van ’t Hoff equation to in situ single-crystal data. The calculation of thermodynamic values was carried out by both traditional and PCA-based approaches, producing comparable results. The obtained ΔH value is significant and involves systems (CO(2) and Y zeolite) with no toxicity, superb stability and chemical inertness. Such features, coupled with the absence of carbonate formation and framework inertness upon adsorption, were demonstrated for the bulk crystal by the single-crystal experiment, and suggest that the phenomenon can be easily reversed for a large number of cycles, with CO(2) released on demand. The main advantages of PCA-assisted analysis reside in its speed and in the possibility of it being applied directly to raw data, possibly as an ‘online’ data-quality test during data collection, without any a priori knowledge of the crystal structure. |
format | Online Article Text |
id | pubmed-6396398 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-63963982019-03-13 CO(2) adsorption in Y zeolite: a structural and dynamic view by a novel principal-component-analysis-assisted in situ single-crystal X-ray diffraction experiment Conterosito, Eleonora Palin, Luca Caliandro, Rocco van Beek, Wouter Chernyshov, Dmitry Milanesio, Marco Acta Crystallogr A Found Adv Research Papers The increasing efficiency of detectors and brightness of X-rays in both laboratory and large-scale facilities allow the collection of full single-crystal X-ray data sets within minutes. The analysis of these ‘crystallographic big data’ requires new tools and approaches. To answer these needs, the use of principal component analysis (PCA) is proposed to improve the efficiency and speed of the analysis. Potentialities and limitations of PCA were investigated using single-crystal X-ray diffraction (XRD) data collected in situ on Y zeolite, in which CO(2), acting as an active species, is thermally adsorbed while cooling from 300 to 200 K. For the first time, thanks to the high sensitivity of single-crystal XRD, it was possible to determine the sites where CO(2) is adsorbed, the increase in their occupancy while the temperature is decreased, and the correlated motion of active species, i.e. CO(2), H(2)O and Na(+). PCA allowed identification and elimination of problematic data sets, and better understanding of the trends of the occupancies of CO(2), Na(+) and water. The quality of the data allowed for the first time calculation of the enthalpy (ΔH) and entropy (ΔS) of the CO(2) adsorption by applying the van ’t Hoff equation to in situ single-crystal data. The calculation of thermodynamic values was carried out by both traditional and PCA-based approaches, producing comparable results. The obtained ΔH value is significant and involves systems (CO(2) and Y zeolite) with no toxicity, superb stability and chemical inertness. Such features, coupled with the absence of carbonate formation and framework inertness upon adsorption, were demonstrated for the bulk crystal by the single-crystal experiment, and suggest that the phenomenon can be easily reversed for a large number of cycles, with CO(2) released on demand. The main advantages of PCA-assisted analysis reside in its speed and in the possibility of it being applied directly to raw data, possibly as an ‘online’ data-quality test during data collection, without any a priori knowledge of the crystal structure. International Union of Crystallography 2019-02-06 /pmc/articles/PMC6396398/ /pubmed/30821256 http://dx.doi.org/10.1107/S2053273318017618 Text en © Eleonora Conterosito et al. 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Conterosito, Eleonora Palin, Luca Caliandro, Rocco van Beek, Wouter Chernyshov, Dmitry Milanesio, Marco CO(2) adsorption in Y zeolite: a structural and dynamic view by a novel principal-component-analysis-assisted in situ single-crystal X-ray diffraction experiment |
title | CO(2) adsorption in Y zeolite: a structural and dynamic view by a novel principal-component-analysis-assisted in situ single-crystal X-ray diffraction experiment |
title_full | CO(2) adsorption in Y zeolite: a structural and dynamic view by a novel principal-component-analysis-assisted in situ single-crystal X-ray diffraction experiment |
title_fullStr | CO(2) adsorption in Y zeolite: a structural and dynamic view by a novel principal-component-analysis-assisted in situ single-crystal X-ray diffraction experiment |
title_full_unstemmed | CO(2) adsorption in Y zeolite: a structural and dynamic view by a novel principal-component-analysis-assisted in situ single-crystal X-ray diffraction experiment |
title_short | CO(2) adsorption in Y zeolite: a structural and dynamic view by a novel principal-component-analysis-assisted in situ single-crystal X-ray diffraction experiment |
title_sort | co(2) adsorption in y zeolite: a structural and dynamic view by a novel principal-component-analysis-assisted in situ single-crystal x-ray diffraction experiment |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6396398/ https://www.ncbi.nlm.nih.gov/pubmed/30821256 http://dx.doi.org/10.1107/S2053273318017618 |
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