Cargando…

Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds

Duckweeds are small, free-floating, largely asexual and highly neotenous organisms. They display the most rapid growth among flowering plants and are of growing interest in aquaculture and genome biology. Genomic and chromosomal data are still rare. Applying flow-cytometric genome size measurement,...

Descripción completa

Detalles Bibliográficos
Autores principales: Hoang, Phuong T. N., Schubert, Veit, Meister, Armin, Fuchs, Jörg, Schubert, Ingo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6397220/
https://www.ncbi.nlm.nih.gov/pubmed/30824726
http://dx.doi.org/10.1038/s41598-019-39332-w
_version_ 1783399384826773504
author Hoang, Phuong T. N.
Schubert, Veit
Meister, Armin
Fuchs, Jörg
Schubert, Ingo
author_facet Hoang, Phuong T. N.
Schubert, Veit
Meister, Armin
Fuchs, Jörg
Schubert, Ingo
author_sort Hoang, Phuong T. N.
collection PubMed
description Duckweeds are small, free-floating, largely asexual and highly neotenous organisms. They display the most rapid growth among flowering plants and are of growing interest in aquaculture and genome biology. Genomic and chromosomal data are still rare. Applying flow-cytometric genome size measurement, microscopic determination of frond, cell and nucleus morphology, as well as fluorescence in situ hybridization (FISH) for localization of ribosomal DNA (rDNA), we compared eleven species, representative for the five duckweed genera to search for potential correlations between genome size, cell and nuclei volume, simplified body architecture (neoteny), chromosome numbers and rDNA loci. We found a ~14-fold genome size variation (from 160 to 2203 Mbp), considerable differences in frond size and shape, highly variable guard cell and nucleus size, chromosome number (from 2n = 36 to 82) and number of 5S and 45S rDNA loci. In general, genome size is positively correlated with guard cell and nucleus volume (p < 0.001) and with the neoteny level and inversely with the frond size. In individual cases these correlations could be blurred for instance by particular body and cell structures which seem to be linked to specific floating styles. Chromosome number and rDNA loci variation between the tested species was independent of the genome size. We could not confirm previously reported intraspecific variation of chromosome numbers between individual clones of the genera Spirodela and Landoltia.
format Online
Article
Text
id pubmed-6397220
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-63972202019-03-05 Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds Hoang, Phuong T. N. Schubert, Veit Meister, Armin Fuchs, Jörg Schubert, Ingo Sci Rep Article Duckweeds are small, free-floating, largely asexual and highly neotenous organisms. They display the most rapid growth among flowering plants and are of growing interest in aquaculture and genome biology. Genomic and chromosomal data are still rare. Applying flow-cytometric genome size measurement, microscopic determination of frond, cell and nucleus morphology, as well as fluorescence in situ hybridization (FISH) for localization of ribosomal DNA (rDNA), we compared eleven species, representative for the five duckweed genera to search for potential correlations between genome size, cell and nuclei volume, simplified body architecture (neoteny), chromosome numbers and rDNA loci. We found a ~14-fold genome size variation (from 160 to 2203 Mbp), considerable differences in frond size and shape, highly variable guard cell and nucleus size, chromosome number (from 2n = 36 to 82) and number of 5S and 45S rDNA loci. In general, genome size is positively correlated with guard cell and nucleus volume (p < 0.001) and with the neoteny level and inversely with the frond size. In individual cases these correlations could be blurred for instance by particular body and cell structures which seem to be linked to specific floating styles. Chromosome number and rDNA loci variation between the tested species was independent of the genome size. We could not confirm previously reported intraspecific variation of chromosome numbers between individual clones of the genera Spirodela and Landoltia. Nature Publishing Group UK 2019-03-01 /pmc/articles/PMC6397220/ /pubmed/30824726 http://dx.doi.org/10.1038/s41598-019-39332-w Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Hoang, Phuong T. N.
Schubert, Veit
Meister, Armin
Fuchs, Jörg
Schubert, Ingo
Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds
title Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds
title_full Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds
title_fullStr Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds
title_full_unstemmed Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds
title_short Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds
title_sort variation in genome size, cell and nucleus volume, chromosome number and rdna loci among duckweeds
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6397220/
https://www.ncbi.nlm.nih.gov/pubmed/30824726
http://dx.doi.org/10.1038/s41598-019-39332-w
work_keys_str_mv AT hoangphuongtn variationingenomesizecellandnucleusvolumechromosomenumberandrdnalociamongduckweeds
AT schubertveit variationingenomesizecellandnucleusvolumechromosomenumberandrdnalociamongduckweeds
AT meisterarmin variationingenomesizecellandnucleusvolumechromosomenumberandrdnalociamongduckweeds
AT fuchsjorg variationingenomesizecellandnucleusvolumechromosomenumberandrdnalociamongduckweeds
AT schubertingo variationingenomesizecellandnucleusvolumechromosomenumberandrdnalociamongduckweeds