MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches

BACKGROUND: Metagenomic datasets provide an opportunity to study horizontal gene transfer (HGT) on the level of a microbial community. However, current HGT detection methods cannot be applied to community-level datasets or require reference genomes. Here, we present MetaCHIP, a pipeline for referenc...

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Detalles Bibliográficos
Autores principales: Song, Weizhi, Wemheuer, Bernd, Zhang, Shan, Steensen, Kerrin, Thomas, Torsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Methodology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6399960/
https://www.ncbi.nlm.nih.gov/pubmed/30832740
http://dx.doi.org/10.1186/s40168-019-0649-y

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6399960/
https://www.ncbi.nlm.nih.gov/pubmed/30832740
http://dx.doi.org/10.1186/s40168-019-0649-y

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