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Challenge data set for macromolecular multi-microcrystallography
A synthetic data set demonstrating a particularly challenging case of indexing ambiguity in the context of radiation damage was generated. This set shall serve as a standard benchmark and reference point for the ongoing development of new methods and new approaches to robust structure solution when...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400260/ https://www.ncbi.nlm.nih.gov/pubmed/30821701 http://dx.doi.org/10.1107/S2059798319001426 |
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author | Holton, James M. |
author_facet | Holton, James M. |
author_sort | Holton, James M. |
collection | PubMed |
description | A synthetic data set demonstrating a particularly challenging case of indexing ambiguity in the context of radiation damage was generated. This set shall serve as a standard benchmark and reference point for the ongoing development of new methods and new approaches to robust structure solution when single-crystal methods are insufficient. Of the 100 short wedges of data, only the first 36 are currently necessary to solve the structure by ‘cheating’, or using the correct reference structure as a guide. The total wall-clock time and number of crystals required to solve the structure without cheating is proposed as a metric for the efficacy and efficiency of a given multi-crystal automation pipeline. |
format | Online Article Text |
id | pubmed-6400260 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-64002602019-03-13 Challenge data set for macromolecular multi-microcrystallography Holton, James M. Acta Crystallogr D Struct Biol Research Papers A synthetic data set demonstrating a particularly challenging case of indexing ambiguity in the context of radiation damage was generated. This set shall serve as a standard benchmark and reference point for the ongoing development of new methods and new approaches to robust structure solution when single-crystal methods are insufficient. Of the 100 short wedges of data, only the first 36 are currently necessary to solve the structure by ‘cheating’, or using the correct reference structure as a guide. The total wall-clock time and number of crystals required to solve the structure without cheating is proposed as a metric for the efficacy and efficiency of a given multi-crystal automation pipeline. International Union of Crystallography 2019-02-06 /pmc/articles/PMC6400260/ /pubmed/30821701 http://dx.doi.org/10.1107/S2059798319001426 Text en © Holton 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Holton, James M. Challenge data set for macromolecular multi-microcrystallography |
title | Challenge data set for macromolecular multi-microcrystallography |
title_full | Challenge data set for macromolecular multi-microcrystallography |
title_fullStr | Challenge data set for macromolecular multi-microcrystallography |
title_full_unstemmed | Challenge data set for macromolecular multi-microcrystallography |
title_short | Challenge data set for macromolecular multi-microcrystallography |
title_sort | challenge data set for macromolecular multi-microcrystallography |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400260/ https://www.ncbi.nlm.nih.gov/pubmed/30821701 http://dx.doi.org/10.1107/S2059798319001426 |
work_keys_str_mv | AT holtonjamesm challengedatasetformacromolecularmultimicrocrystallography |