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Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization
An essential step in the analysis of agent-based simulation is sensitivity analysis, which namely examines the dependency of parameter values on simulation results. Although a number of approaches have been proposed for sensitivity analysis, they still have limitations in exhaustivity and interpreta...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400389/ https://www.ncbi.nlm.nih.gov/pubmed/30835730 http://dx.doi.org/10.1371/journal.pone.0210678 |
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author | Niida, Atsushi Hasegawa, Takanori Miyano, Satoru |
author_facet | Niida, Atsushi Hasegawa, Takanori Miyano, Satoru |
author_sort | Niida, Atsushi |
collection | PubMed |
description | An essential step in the analysis of agent-based simulation is sensitivity analysis, which namely examines the dependency of parameter values on simulation results. Although a number of approaches have been proposed for sensitivity analysis, they still have limitations in exhaustivity and interpretability. In this study, we propose a novel methodology for sensitivity analysis of agent-based simulation, MASSIVE (Massively parallel Agent-based Simulations and Subsequent Interactive Visualization-based Exploration). MASSIVE takes a unique paradigm, which is completely different from those of sensitivity analysis methods developed so far, By combining massively parallel computation and interactive data visualization, MASSIVE enables us to inspect a broad parameter space intuitively. We demonstrated the utility of MASSIVE by its application to cancer evolution simulation, which successfully identified conditions that generate heterogeneous tumors. We believe that our approach would be a de facto standard for sensitivity analysis of agent-based simulation in an era of evergrowing computational technology. All the results form our MASSIVE analysis are available at https://www.hgc.jp/~niiyan/massive. |
format | Online Article Text |
id | pubmed-6400389 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-64003892019-03-17 Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization Niida, Atsushi Hasegawa, Takanori Miyano, Satoru PLoS One Research Article An essential step in the analysis of agent-based simulation is sensitivity analysis, which namely examines the dependency of parameter values on simulation results. Although a number of approaches have been proposed for sensitivity analysis, they still have limitations in exhaustivity and interpretability. In this study, we propose a novel methodology for sensitivity analysis of agent-based simulation, MASSIVE (Massively parallel Agent-based Simulations and Subsequent Interactive Visualization-based Exploration). MASSIVE takes a unique paradigm, which is completely different from those of sensitivity analysis methods developed so far, By combining massively parallel computation and interactive data visualization, MASSIVE enables us to inspect a broad parameter space intuitively. We demonstrated the utility of MASSIVE by its application to cancer evolution simulation, which successfully identified conditions that generate heterogeneous tumors. We believe that our approach would be a de facto standard for sensitivity analysis of agent-based simulation in an era of evergrowing computational technology. All the results form our MASSIVE analysis are available at https://www.hgc.jp/~niiyan/massive. Public Library of Science 2019-03-05 /pmc/articles/PMC6400389/ /pubmed/30835730 http://dx.doi.org/10.1371/journal.pone.0210678 Text en © 2019 Niida et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Niida, Atsushi Hasegawa, Takanori Miyano, Satoru Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization |
title | Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization |
title_full | Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization |
title_fullStr | Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization |
title_full_unstemmed | Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization |
title_short | Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization |
title_sort | sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400389/ https://www.ncbi.nlm.nih.gov/pubmed/30835730 http://dx.doi.org/10.1371/journal.pone.0210678 |
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