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Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization

An essential step in the analysis of agent-based simulation is sensitivity analysis, which namely examines the dependency of parameter values on simulation results. Although a number of approaches have been proposed for sensitivity analysis, they still have limitations in exhaustivity and interpreta...

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Detalles Bibliográficos
Autores principales: Niida, Atsushi, Hasegawa, Takanori, Miyano, Satoru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400389/
https://www.ncbi.nlm.nih.gov/pubmed/30835730
http://dx.doi.org/10.1371/journal.pone.0210678
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author Niida, Atsushi
Hasegawa, Takanori
Miyano, Satoru
author_facet Niida, Atsushi
Hasegawa, Takanori
Miyano, Satoru
author_sort Niida, Atsushi
collection PubMed
description An essential step in the analysis of agent-based simulation is sensitivity analysis, which namely examines the dependency of parameter values on simulation results. Although a number of approaches have been proposed for sensitivity analysis, they still have limitations in exhaustivity and interpretability. In this study, we propose a novel methodology for sensitivity analysis of agent-based simulation, MASSIVE (Massively parallel Agent-based Simulations and Subsequent Interactive Visualization-based Exploration). MASSIVE takes a unique paradigm, which is completely different from those of sensitivity analysis methods developed so far, By combining massively parallel computation and interactive data visualization, MASSIVE enables us to inspect a broad parameter space intuitively. We demonstrated the utility of MASSIVE by its application to cancer evolution simulation, which successfully identified conditions that generate heterogeneous tumors. We believe that our approach would be a de facto standard for sensitivity analysis of agent-based simulation in an era of evergrowing computational technology. All the results form our MASSIVE analysis are available at https://www.hgc.jp/~niiyan/massive.
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spelling pubmed-64003892019-03-17 Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization Niida, Atsushi Hasegawa, Takanori Miyano, Satoru PLoS One Research Article An essential step in the analysis of agent-based simulation is sensitivity analysis, which namely examines the dependency of parameter values on simulation results. Although a number of approaches have been proposed for sensitivity analysis, they still have limitations in exhaustivity and interpretability. In this study, we propose a novel methodology for sensitivity analysis of agent-based simulation, MASSIVE (Massively parallel Agent-based Simulations and Subsequent Interactive Visualization-based Exploration). MASSIVE takes a unique paradigm, which is completely different from those of sensitivity analysis methods developed so far, By combining massively parallel computation and interactive data visualization, MASSIVE enables us to inspect a broad parameter space intuitively. We demonstrated the utility of MASSIVE by its application to cancer evolution simulation, which successfully identified conditions that generate heterogeneous tumors. We believe that our approach would be a de facto standard for sensitivity analysis of agent-based simulation in an era of evergrowing computational technology. All the results form our MASSIVE analysis are available at https://www.hgc.jp/~niiyan/massive. Public Library of Science 2019-03-05 /pmc/articles/PMC6400389/ /pubmed/30835730 http://dx.doi.org/10.1371/journal.pone.0210678 Text en © 2019 Niida et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Niida, Atsushi
Hasegawa, Takanori
Miyano, Satoru
Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization
title Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization
title_full Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization
title_fullStr Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization
title_full_unstemmed Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization
title_short Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization
title_sort sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400389/
https://www.ncbi.nlm.nih.gov/pubmed/30835730
http://dx.doi.org/10.1371/journal.pone.0210678
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