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Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses

Purpose: This study aimed to comprehensively investigate the differential expression and prognostic indicators of the tripartite motif-containing (TRIM) gene family in non-small cell lung cancer (NSCLC). Methods: The Cancer Genome Atlas (TCGA) Research Network and three datasets from Gene Expression...

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Autores principales: Han, Xiaoying, Huang, Cuicui, Qu, Xiao, Liu, Shaorui, Yang, Xudong, Wang, Yu, Bie, Fenglong, Liu, Qi, Du, Jiajun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400804/
https://www.ncbi.nlm.nih.gov/pubmed/30854090
http://dx.doi.org/10.7150/jca.27856
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author Han, Xiaoying
Huang, Cuicui
Qu, Xiao
Liu, Shaorui
Yang, Xudong
Wang, Yu
Bie, Fenglong
Liu, Qi
Du, Jiajun
author_facet Han, Xiaoying
Huang, Cuicui
Qu, Xiao
Liu, Shaorui
Yang, Xudong
Wang, Yu
Bie, Fenglong
Liu, Qi
Du, Jiajun
author_sort Han, Xiaoying
collection PubMed
description Purpose: This study aimed to comprehensively investigate the differential expression and prognostic indicators of the tripartite motif-containing (TRIM) gene family in non-small cell lung cancer (NSCLC). Methods: The Cancer Genome Atlas (TCGA) Research Network and three datasets from Gene Expression Omnibus (GEO) database were used to assess TRIM gene family expression patterns in NSCLC. Quantitative real-time PCR and immunohistochemistry (IHC) were conducted to confirm differentially expressed genes (DEGs). Kaplan-Meier survival analysis and univariate Cox regression analysis were carried out to analyze the association between TRIM gene expression and NSCLC prognoses. Gene set enrichment analysis (GSEA) was carried on for the predict the biological processes. Results: Of the 78 TRIM family members measured, TRIM15 was selected due to the DEGs and the prognostic value regarding NSCLC. In lung squamous cell carcinoma (LUSC), the Log(2) fold change (Log(2)FC) of TRIM15 was 5.16 (p= 0.00575), whereas in lung adenocarcinoma (LUAD), it was 6.37 (p =6.78E-07). TRIM15 upregulation was related to poor prognoses in both LUSC (HR 1.353; 95%CI 1.023-1.789; p =0.034) and LUAD (HR 1.560; 95%CI 1.159-2.101; p =0.003). Using immunohistochemistry, TRIM15 expression was significantly higher in NSCLC tissues compared with that of matched normal tissues (p =0.0009), and similar findings were generated with tissue microarray analysis (p<0.0001). Conclusion: TRIM15 could act as a diagnostic predictor or therapeutic target for lung cancer treatments.
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spelling pubmed-64008042019-03-08 Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses Han, Xiaoying Huang, Cuicui Qu, Xiao Liu, Shaorui Yang, Xudong Wang, Yu Bie, Fenglong Liu, Qi Du, Jiajun J Cancer Research Paper Purpose: This study aimed to comprehensively investigate the differential expression and prognostic indicators of the tripartite motif-containing (TRIM) gene family in non-small cell lung cancer (NSCLC). Methods: The Cancer Genome Atlas (TCGA) Research Network and three datasets from Gene Expression Omnibus (GEO) database were used to assess TRIM gene family expression patterns in NSCLC. Quantitative real-time PCR and immunohistochemistry (IHC) were conducted to confirm differentially expressed genes (DEGs). Kaplan-Meier survival analysis and univariate Cox regression analysis were carried out to analyze the association between TRIM gene expression and NSCLC prognoses. Gene set enrichment analysis (GSEA) was carried on for the predict the biological processes. Results: Of the 78 TRIM family members measured, TRIM15 was selected due to the DEGs and the prognostic value regarding NSCLC. In lung squamous cell carcinoma (LUSC), the Log(2) fold change (Log(2)FC) of TRIM15 was 5.16 (p= 0.00575), whereas in lung adenocarcinoma (LUAD), it was 6.37 (p =6.78E-07). TRIM15 upregulation was related to poor prognoses in both LUSC (HR 1.353; 95%CI 1.023-1.789; p =0.034) and LUAD (HR 1.560; 95%CI 1.159-2.101; p =0.003). Using immunohistochemistry, TRIM15 expression was significantly higher in NSCLC tissues compared with that of matched normal tissues (p =0.0009), and similar findings were generated with tissue microarray analysis (p<0.0001). Conclusion: TRIM15 could act as a diagnostic predictor or therapeutic target for lung cancer treatments. Ivyspring International Publisher 2019-01-29 /pmc/articles/PMC6400804/ /pubmed/30854090 http://dx.doi.org/10.7150/jca.27856 Text en © Ivyspring International Publisher This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Han, Xiaoying
Huang, Cuicui
Qu, Xiao
Liu, Shaorui
Yang, Xudong
Wang, Yu
Bie, Fenglong
Liu, Qi
Du, Jiajun
Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses
title Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses
title_full Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses
title_fullStr Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses
title_full_unstemmed Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses
title_short Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses
title_sort tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400804/
https://www.ncbi.nlm.nih.gov/pubmed/30854090
http://dx.doi.org/10.7150/jca.27856
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