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Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses
Purpose: This study aimed to comprehensively investigate the differential expression and prognostic indicators of the tripartite motif-containing (TRIM) gene family in non-small cell lung cancer (NSCLC). Methods: The Cancer Genome Atlas (TCGA) Research Network and three datasets from Gene Expression...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Ivyspring International Publisher
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400804/ https://www.ncbi.nlm.nih.gov/pubmed/30854090 http://dx.doi.org/10.7150/jca.27856 |
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author | Han, Xiaoying Huang, Cuicui Qu, Xiao Liu, Shaorui Yang, Xudong Wang, Yu Bie, Fenglong Liu, Qi Du, Jiajun |
author_facet | Han, Xiaoying Huang, Cuicui Qu, Xiao Liu, Shaorui Yang, Xudong Wang, Yu Bie, Fenglong Liu, Qi Du, Jiajun |
author_sort | Han, Xiaoying |
collection | PubMed |
description | Purpose: This study aimed to comprehensively investigate the differential expression and prognostic indicators of the tripartite motif-containing (TRIM) gene family in non-small cell lung cancer (NSCLC). Methods: The Cancer Genome Atlas (TCGA) Research Network and three datasets from Gene Expression Omnibus (GEO) database were used to assess TRIM gene family expression patterns in NSCLC. Quantitative real-time PCR and immunohistochemistry (IHC) were conducted to confirm differentially expressed genes (DEGs). Kaplan-Meier survival analysis and univariate Cox regression analysis were carried out to analyze the association between TRIM gene expression and NSCLC prognoses. Gene set enrichment analysis (GSEA) was carried on for the predict the biological processes. Results: Of the 78 TRIM family members measured, TRIM15 was selected due to the DEGs and the prognostic value regarding NSCLC. In lung squamous cell carcinoma (LUSC), the Log(2) fold change (Log(2)FC) of TRIM15 was 5.16 (p= 0.00575), whereas in lung adenocarcinoma (LUAD), it was 6.37 (p =6.78E-07). TRIM15 upregulation was related to poor prognoses in both LUSC (HR 1.353; 95%CI 1.023-1.789; p =0.034) and LUAD (HR 1.560; 95%CI 1.159-2.101; p =0.003). Using immunohistochemistry, TRIM15 expression was significantly higher in NSCLC tissues compared with that of matched normal tissues (p =0.0009), and similar findings were generated with tissue microarray analysis (p<0.0001). Conclusion: TRIM15 could act as a diagnostic predictor or therapeutic target for lung cancer treatments. |
format | Online Article Text |
id | pubmed-6400804 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-64008042019-03-08 Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses Han, Xiaoying Huang, Cuicui Qu, Xiao Liu, Shaorui Yang, Xudong Wang, Yu Bie, Fenglong Liu, Qi Du, Jiajun J Cancer Research Paper Purpose: This study aimed to comprehensively investigate the differential expression and prognostic indicators of the tripartite motif-containing (TRIM) gene family in non-small cell lung cancer (NSCLC). Methods: The Cancer Genome Atlas (TCGA) Research Network and three datasets from Gene Expression Omnibus (GEO) database were used to assess TRIM gene family expression patterns in NSCLC. Quantitative real-time PCR and immunohistochemistry (IHC) were conducted to confirm differentially expressed genes (DEGs). Kaplan-Meier survival analysis and univariate Cox regression analysis were carried out to analyze the association between TRIM gene expression and NSCLC prognoses. Gene set enrichment analysis (GSEA) was carried on for the predict the biological processes. Results: Of the 78 TRIM family members measured, TRIM15 was selected due to the DEGs and the prognostic value regarding NSCLC. In lung squamous cell carcinoma (LUSC), the Log(2) fold change (Log(2)FC) of TRIM15 was 5.16 (p= 0.00575), whereas in lung adenocarcinoma (LUAD), it was 6.37 (p =6.78E-07). TRIM15 upregulation was related to poor prognoses in both LUSC (HR 1.353; 95%CI 1.023-1.789; p =0.034) and LUAD (HR 1.560; 95%CI 1.159-2.101; p =0.003). Using immunohistochemistry, TRIM15 expression was significantly higher in NSCLC tissues compared with that of matched normal tissues (p =0.0009), and similar findings were generated with tissue microarray analysis (p<0.0001). Conclusion: TRIM15 could act as a diagnostic predictor or therapeutic target for lung cancer treatments. Ivyspring International Publisher 2019-01-29 /pmc/articles/PMC6400804/ /pubmed/30854090 http://dx.doi.org/10.7150/jca.27856 Text en © Ivyspring International Publisher This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Han, Xiaoying Huang, Cuicui Qu, Xiao Liu, Shaorui Yang, Xudong Wang, Yu Bie, Fenglong Liu, Qi Du, Jiajun Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses |
title | Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses |
title_full | Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses |
title_fullStr | Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses |
title_full_unstemmed | Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses |
title_short | Tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses |
title_sort | tripartite motif-containing 15 overexpression in non-small cell lung cancer is associated with poor patient prognoses |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400804/ https://www.ncbi.nlm.nih.gov/pubmed/30854090 http://dx.doi.org/10.7150/jca.27856 |
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