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Efficient transposition of Tn4556 by alterations in inverted repeats using a delivery vector carrying a counter-selectable marker for Streptomyces

A 6625-base pair transposon, Tn4556, was initially isolated from a Streptomyces strain and a sequence analysis was performed; however, its annotation data remain incomplete. At least three positions were identified as frameshift and base-exchange errors by resequencing. The revised sequence revealed...

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Autores principales: Sota, Masahiro, Sakoda, Akiko, Ikeda, Haruo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6403206/
https://www.ncbi.nlm.nih.gov/pubmed/30460506
http://dx.doi.org/10.1007/s10295-018-2101-x
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author Sota, Masahiro
Sakoda, Akiko
Ikeda, Haruo
author_facet Sota, Masahiro
Sakoda, Akiko
Ikeda, Haruo
author_sort Sota, Masahiro
collection PubMed
description A 6625-base pair transposon, Tn4556, was initially isolated from a Streptomyces strain and a sequence analysis was performed; however, its annotation data remain incomplete. At least three positions were identified as frameshift and base-exchange errors by resequencing. The revised sequence revealed that Tn4556 contains four open reading frames that encode transposase, methyltransferase, isoprenyl diphosphate transferase, and resolvase, respectively. Thirty-eight-base pair inverted repeat (IR) sequences at both ends contained a 1-bp mismatch flanked by a target duplication site, and transposition efficiency was improved by the replacement of imperfectly matched IR-L to perfectly matched IR-L. The detection of Tn4556 transposition was markedly facilitated using a delivery vector carrying a strictly counter-selectable marker for Streptomyces strains.
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spelling pubmed-64032062019-03-27 Efficient transposition of Tn4556 by alterations in inverted repeats using a delivery vector carrying a counter-selectable marker for Streptomyces Sota, Masahiro Sakoda, Akiko Ikeda, Haruo J Ind Microbiol Biotechnol Genetics and Molecular Biology of Industrial Organisms - Short Communication A 6625-base pair transposon, Tn4556, was initially isolated from a Streptomyces strain and a sequence analysis was performed; however, its annotation data remain incomplete. At least three positions were identified as frameshift and base-exchange errors by resequencing. The revised sequence revealed that Tn4556 contains four open reading frames that encode transposase, methyltransferase, isoprenyl diphosphate transferase, and resolvase, respectively. Thirty-eight-base pair inverted repeat (IR) sequences at both ends contained a 1-bp mismatch flanked by a target duplication site, and transposition efficiency was improved by the replacement of imperfectly matched IR-L to perfectly matched IR-L. The detection of Tn4556 transposition was markedly facilitated using a delivery vector carrying a strictly counter-selectable marker for Streptomyces strains. Springer International Publishing 2018-11-20 2019 /pmc/articles/PMC6403206/ /pubmed/30460506 http://dx.doi.org/10.1007/s10295-018-2101-x Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Genetics and Molecular Biology of Industrial Organisms - Short Communication
Sota, Masahiro
Sakoda, Akiko
Ikeda, Haruo
Efficient transposition of Tn4556 by alterations in inverted repeats using a delivery vector carrying a counter-selectable marker for Streptomyces
title Efficient transposition of Tn4556 by alterations in inverted repeats using a delivery vector carrying a counter-selectable marker for Streptomyces
title_full Efficient transposition of Tn4556 by alterations in inverted repeats using a delivery vector carrying a counter-selectable marker for Streptomyces
title_fullStr Efficient transposition of Tn4556 by alterations in inverted repeats using a delivery vector carrying a counter-selectable marker for Streptomyces
title_full_unstemmed Efficient transposition of Tn4556 by alterations in inverted repeats using a delivery vector carrying a counter-selectable marker for Streptomyces
title_short Efficient transposition of Tn4556 by alterations in inverted repeats using a delivery vector carrying a counter-selectable marker for Streptomyces
title_sort efficient transposition of tn4556 by alterations in inverted repeats using a delivery vector carrying a counter-selectable marker for streptomyces
topic Genetics and Molecular Biology of Industrial Organisms - Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6403206/
https://www.ncbi.nlm.nih.gov/pubmed/30460506
http://dx.doi.org/10.1007/s10295-018-2101-x
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