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From Big Data to Precision Medicine

For over a decade the term “Big data” has been used to describe the rapid increase in volume, variety and velocity of information available, not just in medical research but in almost every aspect of our lives. As scientists, we now have the capacity to rapidly generate, store and analyse data that,...

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Autores principales: Hulsen, Tim, Jamuar, Saumya S., Moody, Alan R., Karnes, Jason H., Varga, Orsolya, Hedensted, Stine, Spreafico, Roberto, Hafler, David A., McKinney, Eoin F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405506/
https://www.ncbi.nlm.nih.gov/pubmed/30881956
http://dx.doi.org/10.3389/fmed.2019.00034
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author Hulsen, Tim
Jamuar, Saumya S.
Moody, Alan R.
Karnes, Jason H.
Varga, Orsolya
Hedensted, Stine
Spreafico, Roberto
Hafler, David A.
McKinney, Eoin F.
author_facet Hulsen, Tim
Jamuar, Saumya S.
Moody, Alan R.
Karnes, Jason H.
Varga, Orsolya
Hedensted, Stine
Spreafico, Roberto
Hafler, David A.
McKinney, Eoin F.
author_sort Hulsen, Tim
collection PubMed
description For over a decade the term “Big data” has been used to describe the rapid increase in volume, variety and velocity of information available, not just in medical research but in almost every aspect of our lives. As scientists, we now have the capacity to rapidly generate, store and analyse data that, only a few years ago, would have taken many years to compile. However, “Big data” no longer means what it once did. The term has expanded and now refers not to just large data volume, but to our increasing ability to analyse and interpret those data. Tautologies such as “data analytics” and “data science” have emerged to describe approaches to the volume of available information as it grows ever larger. New methods dedicated to improving data collection, storage, cleaning, processing and interpretation continue to be developed, although not always by, or for, medical researchers. Exploiting new tools to extract meaning from large volume information has the potential to drive real change in clinical practice, from personalized therapy and intelligent drug design to population screening and electronic health record mining. As ever, where new technology promises “Big Advances,” significant challenges remain. Here we discuss both the opportunities and challenges posed to biomedical research by our increasing ability to tackle large datasets. Important challenges include the need for standardization of data content, format, and clinical definitions, a heightened need for collaborative networks with sharing of both data and expertise and, perhaps most importantly, a need to reconsider how and when analytic methodology is taught to medical researchers. We also set “Big data” analytics in context: recent advances may appear to promise a revolution, sweeping away conventional approaches to medical science. However, their real promise lies in their synergy with, not replacement of, classical hypothesis-driven methods. The generation of novel, data-driven hypotheses based on interpretable models will always require stringent validation and experimental testing. Thus, hypothesis-generating research founded on large datasets adds to, rather than replaces, traditional hypothesis driven science. Each can benefit from the other and it is through using both that we can improve clinical practice.
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spelling pubmed-64055062019-03-15 From Big Data to Precision Medicine Hulsen, Tim Jamuar, Saumya S. Moody, Alan R. Karnes, Jason H. Varga, Orsolya Hedensted, Stine Spreafico, Roberto Hafler, David A. McKinney, Eoin F. Front Med (Lausanne) Medicine For over a decade the term “Big data” has been used to describe the rapid increase in volume, variety and velocity of information available, not just in medical research but in almost every aspect of our lives. As scientists, we now have the capacity to rapidly generate, store and analyse data that, only a few years ago, would have taken many years to compile. However, “Big data” no longer means what it once did. The term has expanded and now refers not to just large data volume, but to our increasing ability to analyse and interpret those data. Tautologies such as “data analytics” and “data science” have emerged to describe approaches to the volume of available information as it grows ever larger. New methods dedicated to improving data collection, storage, cleaning, processing and interpretation continue to be developed, although not always by, or for, medical researchers. Exploiting new tools to extract meaning from large volume information has the potential to drive real change in clinical practice, from personalized therapy and intelligent drug design to population screening and electronic health record mining. As ever, where new technology promises “Big Advances,” significant challenges remain. Here we discuss both the opportunities and challenges posed to biomedical research by our increasing ability to tackle large datasets. Important challenges include the need for standardization of data content, format, and clinical definitions, a heightened need for collaborative networks with sharing of both data and expertise and, perhaps most importantly, a need to reconsider how and when analytic methodology is taught to medical researchers. We also set “Big data” analytics in context: recent advances may appear to promise a revolution, sweeping away conventional approaches to medical science. However, their real promise lies in their synergy with, not replacement of, classical hypothesis-driven methods. The generation of novel, data-driven hypotheses based on interpretable models will always require stringent validation and experimental testing. Thus, hypothesis-generating research founded on large datasets adds to, rather than replaces, traditional hypothesis driven science. Each can benefit from the other and it is through using both that we can improve clinical practice. Frontiers Media S.A. 2019-03-01 /pmc/articles/PMC6405506/ /pubmed/30881956 http://dx.doi.org/10.3389/fmed.2019.00034 Text en Copyright © 2019 Hulsen, Jamuar, Moody, Karnes, Varga, Hedensted, Spreafico, Hafler and McKinney. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Hulsen, Tim
Jamuar, Saumya S.
Moody, Alan R.
Karnes, Jason H.
Varga, Orsolya
Hedensted, Stine
Spreafico, Roberto
Hafler, David A.
McKinney, Eoin F.
From Big Data to Precision Medicine
title From Big Data to Precision Medicine
title_full From Big Data to Precision Medicine
title_fullStr From Big Data to Precision Medicine
title_full_unstemmed From Big Data to Precision Medicine
title_short From Big Data to Precision Medicine
title_sort from big data to precision medicine
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405506/
https://www.ncbi.nlm.nih.gov/pubmed/30881956
http://dx.doi.org/10.3389/fmed.2019.00034
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