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The Impact of Heterogeneity on Single-Cell Sequencing

The importance of diversity and cellular specialization is clear for many reasons, from population-level diversification, to improved resiliency to unforeseen stresses, to unique functions within metazoan organisms during development and differentiation. However, the level of cellular heterogeneity...

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Autores principales: Goldman, Samantha L., MacKay, Matthew, Afshinnekoo, Ebrahim, Melnick, Ari M., Wu, Shuxiu, Mason, Christopher E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405636/
https://www.ncbi.nlm.nih.gov/pubmed/30881372
http://dx.doi.org/10.3389/fgene.2019.00008
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author Goldman, Samantha L.
MacKay, Matthew
Afshinnekoo, Ebrahim
Melnick, Ari M.
Wu, Shuxiu
Mason, Christopher E.
author_facet Goldman, Samantha L.
MacKay, Matthew
Afshinnekoo, Ebrahim
Melnick, Ari M.
Wu, Shuxiu
Mason, Christopher E.
author_sort Goldman, Samantha L.
collection PubMed
description The importance of diversity and cellular specialization is clear for many reasons, from population-level diversification, to improved resiliency to unforeseen stresses, to unique functions within metazoan organisms during development and differentiation. However, the level of cellular heterogeneity is just now becoming clear through the integration of genome-wide analyses and more cost effective Next Generation Sequencing (NGS). With easy access to single-cell NGS (scNGS), new opportunities exist to examine different levels of gene expression and somatic mutational heterogeneity, but these assays can generate yottabyte scale data. Here, we model the importance of heterogeneity for large-scale analysis of scNGS data, with a focus on the utilization in oncology and other diseases, providing a guide to aid in sample size and experimental design.
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spelling pubmed-64056362019-03-15 The Impact of Heterogeneity on Single-Cell Sequencing Goldman, Samantha L. MacKay, Matthew Afshinnekoo, Ebrahim Melnick, Ari M. Wu, Shuxiu Mason, Christopher E. Front Genet Genetics The importance of diversity and cellular specialization is clear for many reasons, from population-level diversification, to improved resiliency to unforeseen stresses, to unique functions within metazoan organisms during development and differentiation. However, the level of cellular heterogeneity is just now becoming clear through the integration of genome-wide analyses and more cost effective Next Generation Sequencing (NGS). With easy access to single-cell NGS (scNGS), new opportunities exist to examine different levels of gene expression and somatic mutational heterogeneity, but these assays can generate yottabyte scale data. Here, we model the importance of heterogeneity for large-scale analysis of scNGS data, with a focus on the utilization in oncology and other diseases, providing a guide to aid in sample size and experimental design. Frontiers Media S.A. 2019-03-01 /pmc/articles/PMC6405636/ /pubmed/30881372 http://dx.doi.org/10.3389/fgene.2019.00008 Text en Copyright © 2019 Goldman, MacKay, Afshinnekoo, Melnick, Wu and Mason. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Goldman, Samantha L.
MacKay, Matthew
Afshinnekoo, Ebrahim
Melnick, Ari M.
Wu, Shuxiu
Mason, Christopher E.
The Impact of Heterogeneity on Single-Cell Sequencing
title The Impact of Heterogeneity on Single-Cell Sequencing
title_full The Impact of Heterogeneity on Single-Cell Sequencing
title_fullStr The Impact of Heterogeneity on Single-Cell Sequencing
title_full_unstemmed The Impact of Heterogeneity on Single-Cell Sequencing
title_short The Impact of Heterogeneity on Single-Cell Sequencing
title_sort impact of heterogeneity on single-cell sequencing
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405636/
https://www.ncbi.nlm.nih.gov/pubmed/30881372
http://dx.doi.org/10.3389/fgene.2019.00008
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