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The Impact of Heterogeneity on Single-Cell Sequencing
The importance of diversity and cellular specialization is clear for many reasons, from population-level diversification, to improved resiliency to unforeseen stresses, to unique functions within metazoan organisms during development and differentiation. However, the level of cellular heterogeneity...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405636/ https://www.ncbi.nlm.nih.gov/pubmed/30881372 http://dx.doi.org/10.3389/fgene.2019.00008 |
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author | Goldman, Samantha L. MacKay, Matthew Afshinnekoo, Ebrahim Melnick, Ari M. Wu, Shuxiu Mason, Christopher E. |
author_facet | Goldman, Samantha L. MacKay, Matthew Afshinnekoo, Ebrahim Melnick, Ari M. Wu, Shuxiu Mason, Christopher E. |
author_sort | Goldman, Samantha L. |
collection | PubMed |
description | The importance of diversity and cellular specialization is clear for many reasons, from population-level diversification, to improved resiliency to unforeseen stresses, to unique functions within metazoan organisms during development and differentiation. However, the level of cellular heterogeneity is just now becoming clear through the integration of genome-wide analyses and more cost effective Next Generation Sequencing (NGS). With easy access to single-cell NGS (scNGS), new opportunities exist to examine different levels of gene expression and somatic mutational heterogeneity, but these assays can generate yottabyte scale data. Here, we model the importance of heterogeneity for large-scale analysis of scNGS data, with a focus on the utilization in oncology and other diseases, providing a guide to aid in sample size and experimental design. |
format | Online Article Text |
id | pubmed-6405636 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-64056362019-03-15 The Impact of Heterogeneity on Single-Cell Sequencing Goldman, Samantha L. MacKay, Matthew Afshinnekoo, Ebrahim Melnick, Ari M. Wu, Shuxiu Mason, Christopher E. Front Genet Genetics The importance of diversity and cellular specialization is clear for many reasons, from population-level diversification, to improved resiliency to unforeseen stresses, to unique functions within metazoan organisms during development and differentiation. However, the level of cellular heterogeneity is just now becoming clear through the integration of genome-wide analyses and more cost effective Next Generation Sequencing (NGS). With easy access to single-cell NGS (scNGS), new opportunities exist to examine different levels of gene expression and somatic mutational heterogeneity, but these assays can generate yottabyte scale data. Here, we model the importance of heterogeneity for large-scale analysis of scNGS data, with a focus on the utilization in oncology and other diseases, providing a guide to aid in sample size and experimental design. Frontiers Media S.A. 2019-03-01 /pmc/articles/PMC6405636/ /pubmed/30881372 http://dx.doi.org/10.3389/fgene.2019.00008 Text en Copyright © 2019 Goldman, MacKay, Afshinnekoo, Melnick, Wu and Mason. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Goldman, Samantha L. MacKay, Matthew Afshinnekoo, Ebrahim Melnick, Ari M. Wu, Shuxiu Mason, Christopher E. The Impact of Heterogeneity on Single-Cell Sequencing |
title | The Impact of Heterogeneity on Single-Cell Sequencing |
title_full | The Impact of Heterogeneity on Single-Cell Sequencing |
title_fullStr | The Impact of Heterogeneity on Single-Cell Sequencing |
title_full_unstemmed | The Impact of Heterogeneity on Single-Cell Sequencing |
title_short | The Impact of Heterogeneity on Single-Cell Sequencing |
title_sort | impact of heterogeneity on single-cell sequencing |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405636/ https://www.ncbi.nlm.nih.gov/pubmed/30881372 http://dx.doi.org/10.3389/fgene.2019.00008 |
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