Cargando…

Topological scoring of protein interaction networks

It remains a significant challenge to define individual protein associations within networks where an individual protein can directly interact with other proteins and/or be part of large complexes, which contain functional modules. Here we demonstrate the topological scoring (TopS) algorithm for the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sardiu, Mihaela E., Gilmore, Joshua M., Groppe, Brad D., Dutta, Arnob, Florens, Laurence, Washburn, Michael P.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6408525/ https://www.ncbi.nlm.nih.gov/pubmed/30850613 http://dx.doi.org/10.1038/s41467-019-09123-y

Ejemplares similares

Identification of Topological Network Modules in Perturbed Protein Interaction Networks
por: Sardiu, Mihaela E., et al.
Publicado: (2017)

Determining Protein Complex Connectivity Using a Probabilistic Deletion Network Derived from Quantitative Proteomics
por: Sardiu, Mihaela E., et al.
Publicado: (2009)

WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage
por: Gilmore, Joshua M., et al.
Publicado: (2016)

Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions
por: Dutta, Arnob, et al.
Publicado: (2014)

Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes
por: Lee, Kenneth K, et al.
Publicado: (2011)

Differential Complex Formation via Paralogs in the Human Sin3 Protein Interaction Network
por: Adams, Mark K., et al.
Publicado: (2020)

Proteins interacting with cloning scars: a source of false positive protein-protein interactions
por: Banks, Charles A. S., et al.
Publicado: (2015)

The Enok acetyltransferase complex interacts with Elg1 and negatively regulates PCNA unloading to promote the G1/S transition
por: Huang, Fu, et al.
Publicado: (2016)

The WHHERE coactivator complex is required for retinoic acid-dependent regulation of embryonic symmetry
por: Vilhais-Neto, Gonçalo C., et al.
Publicado: (2017)

The chromatin bound proteome of the human malaria parasite
por: Batugedara, Gayani, et al.
Publicado: (2020)

Topology-function conservation in protein–protein interaction networks
por: Davis, Darren, et al.
Publicado: (2015)

The multifunctional autophagy pathway in the human malaria parasite, Plasmodium falciparum
por: Cervantes, Serena, et al.
Publicado: (2014)

Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation
por: Lee, Junwoo, et al.
Publicado: (2017)

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology
por: Peterson, G. Jack, et al.
Publicado: (2012)

Topology analysis and visualization of Potyvirus protein-protein interaction network
por: Bosque, Gabriel, et al.
Publicado: (2014)

Torque: topology-free querying of protein interaction networks
por: Bruckner, Sharon, et al.
Publicado: (2009)

Trio, a Rho Family GEF, Interacts with the Presynaptic Active Zone Proteins Piccolo and Bassoon
por: Terry-Lorenzo, Ryan T., et al.
Publicado: (2016)

Differential HDAC1/2 network analysis reveals a role for prefoldin/CCT in HDAC1/2 complex assembly
por: Banks, Charles A. S., et al.
Publicado: (2018)

Topology of molecular interaction networks
por: Winterbach, Wynand, et al.
Publicado: (2013)

Inferring topology from clustering coefficients in protein-protein interaction networks
por: Friedel, Caroline C, et al.
Publicado: (2006)

Topological Properties of Protein-Protein and Metabolic Interaction Networks of Drosophila melanogaster
por: Rajarathinam, Thanigaimani, et al.
Publicado: (2006)

Functional diversity of topological modules in human protein-protein interaction networks
por: Liu, Guangming, et al.
Publicado: (2017)

Association study based on topological constraints of protein–protein interaction networks
por: Guo, Hao-Bo, et al.
Publicado: (2020)

Protein-Protein Interaction Analysis through Network Topology (Oral Cancer)
por: Wahab Khattak, Fazal, et al.
Publicado: (2021)

Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
por: Yang, Ling, et al.
Publicado: (2008)

Lentiviral Vpx Accessory Factor Targets VprBP/DCAF1 Substrate Adaptor for Cullin 4 E3 Ubiquitin Ligase to Enable Macrophage Infection
por: Srivastava, Smita, et al.
Publicado: (2008)

Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes
por: Lee, Kenneth K, et al.
Publicado: (2009)

Effect of dataset selection on the topological interpretation of protein interaction networks
por: Hakes, Luke, et al.
Publicado: (2005)

Topological and Functional Properties of the Small GTPases Protein Interaction Network
por: Delprato, Anna
Publicado: (2012)

Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein
por: Hrecka, Kasia, et al.
Publicado: (2011)

Yeast Nuak1 phosphorylates histone H3 threonine 11 in low glucose stress by the cooperation of AMPK and CK2 signaling
por: Oh, Seunghee, et al.
Publicado: (2020)

The disordered regions of the methyltransferase SETD2 govern its function by regulating its proteolysis and phase separation
por: Bhattacharya, Saikat, et al.
Publicado: (2021)

BRK phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG, and metastatic potential
por: Miah, S., et al.
Publicado: (2019)

Simple Topological Features Reflect Dynamics and Modularity in Protein Interaction Networks
por: Pritykin, Yuri, et al.
Publicado: (2013)

Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding
por: Cannistraci, Carlo Vittorio, et al.
Publicado: (2013)

Gene duplication and neofunctionalization: POLR3G and POLR3GL
por: Renaud, Marianne, et al.
Publicado: (2014)

The plasticity of the pyruvate dehydrogenase complex confers a labile structure that is associated with its catalytic activity
por: Lee, Jaehyoun, et al.
Publicado: (2020)

Detecting protein complexes based on a combination of topological and biological properties in protein-protein interaction network
por: Sharma, Pooja, et al.
Publicado: (2018)

Topology and weights in a protein domain interaction network – a novel way to predict protein interactions
por: Wuchty, Stefan
Publicado: (2006)

SCF(Cyclin F) controls centrosome homeostasis and mitotic fidelity via CP110 degradation
por: D’Angiolella, Vincenzo, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_ha59q8lv3guj9ghtvjubgg0hnt