Cargando…
Development and validation of case-finding algorithms for recurrence of breast cancer using routinely collected administrative data
BACKGROUND: Recurrence is not explicitly documented in cancer registry data that are widely used for research. Patterns of events after initial treatment such as oncology visits, re-operation, and receipt of subsequent chemotherapy or radiation may indicate recurrence. This study aimed to develop an...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6408837/ https://www.ncbi.nlm.nih.gov/pubmed/30849954 http://dx.doi.org/10.1186/s12885-019-5432-8 |
_version_ | 1783401863393050624 |
---|---|
author | Xu, Yuan Kong, Shiying Cheung, Winson Y. Bouchard-Fortier, Antoine Dort, Joseph C. Quan, Hude Buie, Elizabeth M. McKinnon, Geoff Quan, May Lynn |
author_facet | Xu, Yuan Kong, Shiying Cheung, Winson Y. Bouchard-Fortier, Antoine Dort, Joseph C. Quan, Hude Buie, Elizabeth M. McKinnon, Geoff Quan, May Lynn |
author_sort | Xu, Yuan |
collection | PubMed |
description | BACKGROUND: Recurrence is not explicitly documented in cancer registry data that are widely used for research. Patterns of events after initial treatment such as oncology visits, re-operation, and receipt of subsequent chemotherapy or radiation may indicate recurrence. This study aimed to develop and validate algorithms for identifying breast cancer recurrence using routinely collected administrative data. METHODS: The study cohort included all young (≤ 40 years) breast cancer patients (2007–2010), and all patients receiving neoadjuvant chemotherapy (2012–2014) in Alberta, Canada. Health events (including mastectomy, chemotherapy, radiation, biopsy and specialist visits) were obtained from provincial administrative data. The algorithms were developed using classification and regression tree (CART) models and validated against primary chart review. RESULTS: Among 598 patients, 121 (20.2%) had recurrence after a median follow-up of 4 years. The high sensitivity algorithm achieved 94.2% (95% CI: 90.1–98.4%) sensitivity, 93.7% (91.5–95.9%) specificity, 79.2% (72.5–85.8%) positive predictive value (PPV), and 98.5% (97.3–99.6%) negative predictive value (NPV). The high PPV algorithm had 75.2% (67.5–82.9%) sensitivity, 98.3% (97.2–99.5%) specificity, 91.9% (86.6–97.3%) PPV, and 94% (91.9–96.1%) NPV. Combining high PPV and high sensitivity algorithms with additional (7.5%) chart review to resolve discordant cases resulted in 94.2% (90.1–98.4%) sensitivity, 98.3% (97.2–99.5%) specificity, 93.4% (89.1–97.8%) PPV, and 98.5% (97.4–99.6%) NPV. CONCLUSION: The proposed algorithms based on routinely collected administrative data achieved favorably high validity for identifying breast cancer recurrences in a universal healthcare system in Canada. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12885-019-5432-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6408837 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-64088372019-03-21 Development and validation of case-finding algorithms for recurrence of breast cancer using routinely collected administrative data Xu, Yuan Kong, Shiying Cheung, Winson Y. Bouchard-Fortier, Antoine Dort, Joseph C. Quan, Hude Buie, Elizabeth M. McKinnon, Geoff Quan, May Lynn BMC Cancer Research Article BACKGROUND: Recurrence is not explicitly documented in cancer registry data that are widely used for research. Patterns of events after initial treatment such as oncology visits, re-operation, and receipt of subsequent chemotherapy or radiation may indicate recurrence. This study aimed to develop and validate algorithms for identifying breast cancer recurrence using routinely collected administrative data. METHODS: The study cohort included all young (≤ 40 years) breast cancer patients (2007–2010), and all patients receiving neoadjuvant chemotherapy (2012–2014) in Alberta, Canada. Health events (including mastectomy, chemotherapy, radiation, biopsy and specialist visits) were obtained from provincial administrative data. The algorithms were developed using classification and regression tree (CART) models and validated against primary chart review. RESULTS: Among 598 patients, 121 (20.2%) had recurrence after a median follow-up of 4 years. The high sensitivity algorithm achieved 94.2% (95% CI: 90.1–98.4%) sensitivity, 93.7% (91.5–95.9%) specificity, 79.2% (72.5–85.8%) positive predictive value (PPV), and 98.5% (97.3–99.6%) negative predictive value (NPV). The high PPV algorithm had 75.2% (67.5–82.9%) sensitivity, 98.3% (97.2–99.5%) specificity, 91.9% (86.6–97.3%) PPV, and 94% (91.9–96.1%) NPV. Combining high PPV and high sensitivity algorithms with additional (7.5%) chart review to resolve discordant cases resulted in 94.2% (90.1–98.4%) sensitivity, 98.3% (97.2–99.5%) specificity, 93.4% (89.1–97.8%) PPV, and 98.5% (97.4–99.6%) NPV. CONCLUSION: The proposed algorithms based on routinely collected administrative data achieved favorably high validity for identifying breast cancer recurrences in a universal healthcare system in Canada. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12885-019-5432-8) contains supplementary material, which is available to authorized users. BioMed Central 2019-03-08 /pmc/articles/PMC6408837/ /pubmed/30849954 http://dx.doi.org/10.1186/s12885-019-5432-8 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Xu, Yuan Kong, Shiying Cheung, Winson Y. Bouchard-Fortier, Antoine Dort, Joseph C. Quan, Hude Buie, Elizabeth M. McKinnon, Geoff Quan, May Lynn Development and validation of case-finding algorithms for recurrence of breast cancer using routinely collected administrative data |
title | Development and validation of case-finding algorithms for recurrence of breast cancer using routinely collected administrative data |
title_full | Development and validation of case-finding algorithms for recurrence of breast cancer using routinely collected administrative data |
title_fullStr | Development and validation of case-finding algorithms for recurrence of breast cancer using routinely collected administrative data |
title_full_unstemmed | Development and validation of case-finding algorithms for recurrence of breast cancer using routinely collected administrative data |
title_short | Development and validation of case-finding algorithms for recurrence of breast cancer using routinely collected administrative data |
title_sort | development and validation of case-finding algorithms for recurrence of breast cancer using routinely collected administrative data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6408837/ https://www.ncbi.nlm.nih.gov/pubmed/30849954 http://dx.doi.org/10.1186/s12885-019-5432-8 |
work_keys_str_mv | AT xuyuan developmentandvalidationofcasefindingalgorithmsforrecurrenceofbreastcancerusingroutinelycollectedadministrativedata AT kongshiying developmentandvalidationofcasefindingalgorithmsforrecurrenceofbreastcancerusingroutinelycollectedadministrativedata AT cheungwinsony developmentandvalidationofcasefindingalgorithmsforrecurrenceofbreastcancerusingroutinelycollectedadministrativedata AT bouchardfortierantoine developmentandvalidationofcasefindingalgorithmsforrecurrenceofbreastcancerusingroutinelycollectedadministrativedata AT dortjosephc developmentandvalidationofcasefindingalgorithmsforrecurrenceofbreastcancerusingroutinelycollectedadministrativedata AT quanhude developmentandvalidationofcasefindingalgorithmsforrecurrenceofbreastcancerusingroutinelycollectedadministrativedata AT buieelizabethm developmentandvalidationofcasefindingalgorithmsforrecurrenceofbreastcancerusingroutinelycollectedadministrativedata AT mckinnongeoff developmentandvalidationofcasefindingalgorithmsforrecurrenceofbreastcancerusingroutinelycollectedadministrativedata AT quanmaylynn developmentandvalidationofcasefindingalgorithmsforrecurrenceofbreastcancerusingroutinelycollectedadministrativedata |