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Artificial Neural Networks for Prediction of Tuberculosis Disease

Background: The global burden of tuberculosis (TB) and antibiotic resistance is attracting the attention of researchers to develop some novel and rapid diagnostic tools. Although, the conventional methods like culture are considered as the gold standard, they are time consuming in diagnostic procedu...

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Autores principales: Khan, Muhammad Tahir, Kaushik, Aman Chandra, Ji, Linxiang, Malik, Shaukat Iqbal, Ali, Sajid, Wei, Dong-Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6409348/
https://www.ncbi.nlm.nih.gov/pubmed/30886608
http://dx.doi.org/10.3389/fmicb.2019.00395
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author Khan, Muhammad Tahir
Kaushik, Aman Chandra
Ji, Linxiang
Malik, Shaukat Iqbal
Ali, Sajid
Wei, Dong-Qing
author_facet Khan, Muhammad Tahir
Kaushik, Aman Chandra
Ji, Linxiang
Malik, Shaukat Iqbal
Ali, Sajid
Wei, Dong-Qing
author_sort Khan, Muhammad Tahir
collection PubMed
description Background: The global burden of tuberculosis (TB) and antibiotic resistance is attracting the attention of researchers to develop some novel and rapid diagnostic tools. Although, the conventional methods like culture are considered as the gold standard, they are time consuming in diagnostic procedure, during which there are more chances in the transmission of disease. Further, the Xpert MTB/RIF assay offers a fast diagnostic facility within 2 h, but due to low sensitivity in some sample types may lead to more serious state of the disease. The role of computer technologies is now increasing in the diagnostic procedures. Here, in the current study we have applied the artificial neural network (ANN) that predicted the TB disease based on the TB suspect data. Methods: We developed an approach for prediction of TB, based on an ANN. The data was collected from the TB suspects, guardians or care takers along with samples, referred by TB units and health centers. All the samples were processed and cultured. Data was trained on 12,636 records of TB patients, collected during the years 2016 and 2017 from the provincial TB reference laboratory, Khyber Pakhtunkhwa, Pakistan. The training and test set of the suspect data were kept as 70 and 30%, respectively, followed by validation and normalization. The ANN takes the TB suspect’s information such as gender, age, HIV-status, previous TB history, sample type, and signs and symptoms for TB prediction. Results: Based on TB patient data, ANN accurately predicted the Mycobacterium tuberculosis (MTB) positive or negative with an overall accuracy of >94%. Further, the accuracy of the test and validation were found to be >93%. This increased accuracy of ANN in the detection of TB suspected patients might be useful for early management of disease to adopt some control measures in further transmission and reduce the drug resistance burden. Conclusion: ANNs algorithms may play an effective role in the early diagnosis of TB disease that might be applied as a supportive tool. Modern computer technologies should be trained in diagnostics for rapid disease management. Delays in TB diagnosis and initiation treatment may allow the emergence of new cases by transmission, causing high drug resistance in countries with a high TB burden.
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spelling pubmed-64093482019-03-18 Artificial Neural Networks for Prediction of Tuberculosis Disease Khan, Muhammad Tahir Kaushik, Aman Chandra Ji, Linxiang Malik, Shaukat Iqbal Ali, Sajid Wei, Dong-Qing Front Microbiol Microbiology Background: The global burden of tuberculosis (TB) and antibiotic resistance is attracting the attention of researchers to develop some novel and rapid diagnostic tools. Although, the conventional methods like culture are considered as the gold standard, they are time consuming in diagnostic procedure, during which there are more chances in the transmission of disease. Further, the Xpert MTB/RIF assay offers a fast diagnostic facility within 2 h, but due to low sensitivity in some sample types may lead to more serious state of the disease. The role of computer technologies is now increasing in the diagnostic procedures. Here, in the current study we have applied the artificial neural network (ANN) that predicted the TB disease based on the TB suspect data. Methods: We developed an approach for prediction of TB, based on an ANN. The data was collected from the TB suspects, guardians or care takers along with samples, referred by TB units and health centers. All the samples were processed and cultured. Data was trained on 12,636 records of TB patients, collected during the years 2016 and 2017 from the provincial TB reference laboratory, Khyber Pakhtunkhwa, Pakistan. The training and test set of the suspect data were kept as 70 and 30%, respectively, followed by validation and normalization. The ANN takes the TB suspect’s information such as gender, age, HIV-status, previous TB history, sample type, and signs and symptoms for TB prediction. Results: Based on TB patient data, ANN accurately predicted the Mycobacterium tuberculosis (MTB) positive or negative with an overall accuracy of >94%. Further, the accuracy of the test and validation were found to be >93%. This increased accuracy of ANN in the detection of TB suspected patients might be useful for early management of disease to adopt some control measures in further transmission and reduce the drug resistance burden. Conclusion: ANNs algorithms may play an effective role in the early diagnosis of TB disease that might be applied as a supportive tool. Modern computer technologies should be trained in diagnostics for rapid disease management. Delays in TB diagnosis and initiation treatment may allow the emergence of new cases by transmission, causing high drug resistance in countries with a high TB burden. Frontiers Media S.A. 2019-03-04 /pmc/articles/PMC6409348/ /pubmed/30886608 http://dx.doi.org/10.3389/fmicb.2019.00395 Text en Copyright © 2019 Khan, Kaushik, Ji, Malik, Ali and Wei. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Khan, Muhammad Tahir
Kaushik, Aman Chandra
Ji, Linxiang
Malik, Shaukat Iqbal
Ali, Sajid
Wei, Dong-Qing
Artificial Neural Networks for Prediction of Tuberculosis Disease
title Artificial Neural Networks for Prediction of Tuberculosis Disease
title_full Artificial Neural Networks for Prediction of Tuberculosis Disease
title_fullStr Artificial Neural Networks for Prediction of Tuberculosis Disease
title_full_unstemmed Artificial Neural Networks for Prediction of Tuberculosis Disease
title_short Artificial Neural Networks for Prediction of Tuberculosis Disease
title_sort artificial neural networks for prediction of tuberculosis disease
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6409348/
https://www.ncbi.nlm.nih.gov/pubmed/30886608
http://dx.doi.org/10.3389/fmicb.2019.00395
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