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Molecular Evolution of the Vacuolar Iron Transporter (VIT) Family Genes in 14 Plant Species

The vacuolar iron transporter (VIT) proteins are involved in the storage and transport of iron. However, the evolution of this gene family in plants is unknown. In this study, I first identified 114 VIT genes in 14 plant species and classified these genes into seven groups by phylogenetic analysis....

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Autor principal: Cao, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6409731/
https://www.ncbi.nlm.nih.gov/pubmed/30769903
http://dx.doi.org/10.3390/genes10020144
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author Cao, Jun
author_facet Cao, Jun
author_sort Cao, Jun
collection PubMed
description The vacuolar iron transporter (VIT) proteins are involved in the storage and transport of iron. However, the evolution of this gene family in plants is unknown. In this study, I first identified 114 VIT genes in 14 plant species and classified these genes into seven groups by phylogenetic analysis. Conserved gene organization and motif distribution implied conserved function in each group. I also found that tandem duplication, segmental duplication and transposition contributed to the expansion of this gene family. Additionally, several positive selection sites were identified. Divergent expression patterns of soybean VIT genes were further investigated in different development stages and under iron stress. Functional network analysis exhibited 211 physical or functional interactions. The results will provide the basis for further functional studies of the VIT genes in plants.
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spelling pubmed-64097312019-03-26 Molecular Evolution of the Vacuolar Iron Transporter (VIT) Family Genes in 14 Plant Species Cao, Jun Genes (Basel) Article The vacuolar iron transporter (VIT) proteins are involved in the storage and transport of iron. However, the evolution of this gene family in plants is unknown. In this study, I first identified 114 VIT genes in 14 plant species and classified these genes into seven groups by phylogenetic analysis. Conserved gene organization and motif distribution implied conserved function in each group. I also found that tandem duplication, segmental duplication and transposition contributed to the expansion of this gene family. Additionally, several positive selection sites were identified. Divergent expression patterns of soybean VIT genes were further investigated in different development stages and under iron stress. Functional network analysis exhibited 211 physical or functional interactions. The results will provide the basis for further functional studies of the VIT genes in plants. MDPI 2019-02-14 /pmc/articles/PMC6409731/ /pubmed/30769903 http://dx.doi.org/10.3390/genes10020144 Text en © 2019 by the author. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cao, Jun
Molecular Evolution of the Vacuolar Iron Transporter (VIT) Family Genes in 14 Plant Species
title Molecular Evolution of the Vacuolar Iron Transporter (VIT) Family Genes in 14 Plant Species
title_full Molecular Evolution of the Vacuolar Iron Transporter (VIT) Family Genes in 14 Plant Species
title_fullStr Molecular Evolution of the Vacuolar Iron Transporter (VIT) Family Genes in 14 Plant Species
title_full_unstemmed Molecular Evolution of the Vacuolar Iron Transporter (VIT) Family Genes in 14 Plant Species
title_short Molecular Evolution of the Vacuolar Iron Transporter (VIT) Family Genes in 14 Plant Species
title_sort molecular evolution of the vacuolar iron transporter (vit) family genes in 14 plant species
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6409731/
https://www.ncbi.nlm.nih.gov/pubmed/30769903
http://dx.doi.org/10.3390/genes10020144
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