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Relevance of Titin Missense and Non-Frameshifting Insertions/Deletions Variants in Dilated Cardiomyopathy

Recent advancements in next generation sequencing (NGS) technology have led to the identification of the giant sarcomere gene, titin (TTN), as a major human disease gene. Truncating variants of TTN (TTNtv) especially in the A-band region account for 20% of dilated cardiomyopathy (DCM) cases. Much at...

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Autores principales: Akinrinade, Oyediran, Heliö, Tiina, Lekanne Deprez, Ronald H., Jongbloed, Jan D. H., Boven, Ludolf G., van den Berg, Maarten P., Pinto, Yigal M., Alastalo, Tero-Pekka, Myllykangas, Samuel, Spaendonck-Zwarts, Karin van, van Tintelen, J. Peter, van der Zwaag, Paul A., Koskenvuo, Juha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6412046/
https://www.ncbi.nlm.nih.gov/pubmed/30858397
http://dx.doi.org/10.1038/s41598-019-39911-x
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author Akinrinade, Oyediran
Heliö, Tiina
Lekanne Deprez, Ronald H.
Jongbloed, Jan D. H.
Boven, Ludolf G.
van den Berg, Maarten P.
Pinto, Yigal M.
Alastalo, Tero-Pekka
Myllykangas, Samuel
Spaendonck-Zwarts, Karin van
van Tintelen, J. Peter
van der Zwaag, Paul A.
Koskenvuo, Juha
author_facet Akinrinade, Oyediran
Heliö, Tiina
Lekanne Deprez, Ronald H.
Jongbloed, Jan D. H.
Boven, Ludolf G.
van den Berg, Maarten P.
Pinto, Yigal M.
Alastalo, Tero-Pekka
Myllykangas, Samuel
Spaendonck-Zwarts, Karin van
van Tintelen, J. Peter
van der Zwaag, Paul A.
Koskenvuo, Juha
author_sort Akinrinade, Oyediran
collection PubMed
description Recent advancements in next generation sequencing (NGS) technology have led to the identification of the giant sarcomere gene, titin (TTN), as a major human disease gene. Truncating variants of TTN (TTNtv) especially in the A-band region account for 20% of dilated cardiomyopathy (DCM) cases. Much attention has been focused on assessment and interpretation of TTNtv in human disease; however, missense and non-frameshifting insertions/deletions (NFS-INDELs) are difficult to assess and interpret in clinical diagnostic workflow. Targeted sequencing covering all exons of TTN was performed on a cohort of 530 primary DCM patients from three cardiogenetic centres across Europe. Using stringent bioinformatic filtering, twenty-nine and two rare TTN missense and NFS-INDELs variants predicted deleterious were identified in 6.98% and 0.38% of DCM patients, respectively. However, when compared with those identified in the largest available reference population database, no significant enrichment of such variants was identified in DCM patients. Moreover, DCM patients and reference individuals had comparable frequencies of splice-region missense variants with predicted splicing alteration. DCM patients and reference populations had comparable frequencies of rare predicted deleterious TTN missense variants including splice-region missense variants suggesting that these variants are not independently causative for DCM. Hence, these variants should be classified as likely benign in the clinical diagnostic workflow, although a modifier effect cannot be excluded at this stage.
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spelling pubmed-64120462019-03-13 Relevance of Titin Missense and Non-Frameshifting Insertions/Deletions Variants in Dilated Cardiomyopathy Akinrinade, Oyediran Heliö, Tiina Lekanne Deprez, Ronald H. Jongbloed, Jan D. H. Boven, Ludolf G. van den Berg, Maarten P. Pinto, Yigal M. Alastalo, Tero-Pekka Myllykangas, Samuel Spaendonck-Zwarts, Karin van van Tintelen, J. Peter van der Zwaag, Paul A. Koskenvuo, Juha Sci Rep Article Recent advancements in next generation sequencing (NGS) technology have led to the identification of the giant sarcomere gene, titin (TTN), as a major human disease gene. Truncating variants of TTN (TTNtv) especially in the A-band region account for 20% of dilated cardiomyopathy (DCM) cases. Much attention has been focused on assessment and interpretation of TTNtv in human disease; however, missense and non-frameshifting insertions/deletions (NFS-INDELs) are difficult to assess and interpret in clinical diagnostic workflow. Targeted sequencing covering all exons of TTN was performed on a cohort of 530 primary DCM patients from three cardiogenetic centres across Europe. Using stringent bioinformatic filtering, twenty-nine and two rare TTN missense and NFS-INDELs variants predicted deleterious were identified in 6.98% and 0.38% of DCM patients, respectively. However, when compared with those identified in the largest available reference population database, no significant enrichment of such variants was identified in DCM patients. Moreover, DCM patients and reference individuals had comparable frequencies of splice-region missense variants with predicted splicing alteration. DCM patients and reference populations had comparable frequencies of rare predicted deleterious TTN missense variants including splice-region missense variants suggesting that these variants are not independently causative for DCM. Hence, these variants should be classified as likely benign in the clinical diagnostic workflow, although a modifier effect cannot be excluded at this stage. Nature Publishing Group UK 2019-03-11 /pmc/articles/PMC6412046/ /pubmed/30858397 http://dx.doi.org/10.1038/s41598-019-39911-x Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Akinrinade, Oyediran
Heliö, Tiina
Lekanne Deprez, Ronald H.
Jongbloed, Jan D. H.
Boven, Ludolf G.
van den Berg, Maarten P.
Pinto, Yigal M.
Alastalo, Tero-Pekka
Myllykangas, Samuel
Spaendonck-Zwarts, Karin van
van Tintelen, J. Peter
van der Zwaag, Paul A.
Koskenvuo, Juha
Relevance of Titin Missense and Non-Frameshifting Insertions/Deletions Variants in Dilated Cardiomyopathy
title Relevance of Titin Missense and Non-Frameshifting Insertions/Deletions Variants in Dilated Cardiomyopathy
title_full Relevance of Titin Missense and Non-Frameshifting Insertions/Deletions Variants in Dilated Cardiomyopathy
title_fullStr Relevance of Titin Missense and Non-Frameshifting Insertions/Deletions Variants in Dilated Cardiomyopathy
title_full_unstemmed Relevance of Titin Missense and Non-Frameshifting Insertions/Deletions Variants in Dilated Cardiomyopathy
title_short Relevance of Titin Missense and Non-Frameshifting Insertions/Deletions Variants in Dilated Cardiomyopathy
title_sort relevance of titin missense and non-frameshifting insertions/deletions variants in dilated cardiomyopathy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6412046/
https://www.ncbi.nlm.nih.gov/pubmed/30858397
http://dx.doi.org/10.1038/s41598-019-39911-x
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