Cargando…

Deep Learning-Based Segmentation and Quantification of Cucumber Powdery Mildew Using Convolutional Neural Network

Powdery mildew is a common disease in plants, and it is also one of the main diseases in the middle and final stages of cucumber (Cucumis sativus). Powdery mildew on plant leaves affects the photosynthesis, which may reduce the plant yield. Therefore, it is of great significance to automatically ide...

Descripción completa

Detalles Bibliográficos
Autores principales: Lin, Ke, Gong, Liang, Huang, Yixiang, Liu, Chengliang, Pan, Junsong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6413718/
https://www.ncbi.nlm.nih.gov/pubmed/30891048
http://dx.doi.org/10.3389/fpls.2019.00155
_version_ 1783402875517403136
author Lin, Ke
Gong, Liang
Huang, Yixiang
Liu, Chengliang
Pan, Junsong
author_facet Lin, Ke
Gong, Liang
Huang, Yixiang
Liu, Chengliang
Pan, Junsong
author_sort Lin, Ke
collection PubMed
description Powdery mildew is a common disease in plants, and it is also one of the main diseases in the middle and final stages of cucumber (Cucumis sativus). Powdery mildew on plant leaves affects the photosynthesis, which may reduce the plant yield. Therefore, it is of great significance to automatically identify powdery mildew. Currently, most image-based models commonly regard the powdery mildew identification problem as a dichotomy case, yielding a true or false classification assertion. However, quantitative assessment of disease resistance traits plays an important role in the screening of breeders for plant varieties. Therefore, there is an urgent need to exploit the extent to which leaves are infected which can be obtained by the area of diseases regions. In order to tackle these challenges, we propose a semantic segmentation model based on convolutional neural networks (CNN) to segment the powdery mildew on cucumber leaf images at pixel level, achieving an average pixel accuracy of 96.08%, intersection over union of 72.11% and Dice accuracy of 83.45% on twenty test samples. This outperforms the existing segmentation methods, K-means, Random forest, and GBDT methods. In conclusion, the proposed model is capable of segmenting the powdery mildew on cucumber leaves at pixel level, which makes a valuable tool for cucumber breeders to assess the severity of powdery mildew.
format Online
Article
Text
id pubmed-6413718
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-64137182019-03-19 Deep Learning-Based Segmentation and Quantification of Cucumber Powdery Mildew Using Convolutional Neural Network Lin, Ke Gong, Liang Huang, Yixiang Liu, Chengliang Pan, Junsong Front Plant Sci Plant Science Powdery mildew is a common disease in plants, and it is also one of the main diseases in the middle and final stages of cucumber (Cucumis sativus). Powdery mildew on plant leaves affects the photosynthesis, which may reduce the plant yield. Therefore, it is of great significance to automatically identify powdery mildew. Currently, most image-based models commonly regard the powdery mildew identification problem as a dichotomy case, yielding a true or false classification assertion. However, quantitative assessment of disease resistance traits plays an important role in the screening of breeders for plant varieties. Therefore, there is an urgent need to exploit the extent to which leaves are infected which can be obtained by the area of diseases regions. In order to tackle these challenges, we propose a semantic segmentation model based on convolutional neural networks (CNN) to segment the powdery mildew on cucumber leaf images at pixel level, achieving an average pixel accuracy of 96.08%, intersection over union of 72.11% and Dice accuracy of 83.45% on twenty test samples. This outperforms the existing segmentation methods, K-means, Random forest, and GBDT methods. In conclusion, the proposed model is capable of segmenting the powdery mildew on cucumber leaves at pixel level, which makes a valuable tool for cucumber breeders to assess the severity of powdery mildew. Frontiers Media S.A. 2019-02-15 /pmc/articles/PMC6413718/ /pubmed/30891048 http://dx.doi.org/10.3389/fpls.2019.00155 Text en Copyright © 2019 Lin, Gong, Huang, Liu and Pan. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Lin, Ke
Gong, Liang
Huang, Yixiang
Liu, Chengliang
Pan, Junsong
Deep Learning-Based Segmentation and Quantification of Cucumber Powdery Mildew Using Convolutional Neural Network
title Deep Learning-Based Segmentation and Quantification of Cucumber Powdery Mildew Using Convolutional Neural Network
title_full Deep Learning-Based Segmentation and Quantification of Cucumber Powdery Mildew Using Convolutional Neural Network
title_fullStr Deep Learning-Based Segmentation and Quantification of Cucumber Powdery Mildew Using Convolutional Neural Network
title_full_unstemmed Deep Learning-Based Segmentation and Quantification of Cucumber Powdery Mildew Using Convolutional Neural Network
title_short Deep Learning-Based Segmentation and Quantification of Cucumber Powdery Mildew Using Convolutional Neural Network
title_sort deep learning-based segmentation and quantification of cucumber powdery mildew using convolutional neural network
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6413718/
https://www.ncbi.nlm.nih.gov/pubmed/30891048
http://dx.doi.org/10.3389/fpls.2019.00155
work_keys_str_mv AT linke deeplearningbasedsegmentationandquantificationofcucumberpowderymildewusingconvolutionalneuralnetwork
AT gongliang deeplearningbasedsegmentationandquantificationofcucumberpowderymildewusingconvolutionalneuralnetwork
AT huangyixiang deeplearningbasedsegmentationandquantificationofcucumberpowderymildewusingconvolutionalneuralnetwork
AT liuchengliang deeplearningbasedsegmentationandquantificationofcucumberpowderymildewusingconvolutionalneuralnetwork
AT panjunsong deeplearningbasedsegmentationandquantificationofcucumberpowderymildewusingconvolutionalneuralnetwork