Cargando…

Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile

This study assessed the dispersal of five bacterial communities from contrasting compartments along a fractured clay till depth profile comprising plow layer soil, preferential flow paths (biopores and the tectonic fractures below), and matrix sediments, down to 350 cm below the surface. A recently...

Descripción completa

Detalles Bibliográficos
Autores principales: Krüger, U. S., Dechesne, A., Bak, F., Badawi, N., Nybroe, O., Aamand, J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6414393/
https://www.ncbi.nlm.nih.gov/pubmed/30658975
http://dx.doi.org/10.1128/AEM.02658-18
_version_ 1783402963476152320
author Krüger, U. S.
Dechesne, A.
Bak, F.
Badawi, N.
Nybroe, O.
Aamand, J.
author_facet Krüger, U. S.
Dechesne, A.
Bak, F.
Badawi, N.
Nybroe, O.
Aamand, J.
author_sort Krüger, U. S.
collection PubMed
description This study assessed the dispersal of five bacterial communities from contrasting compartments along a fractured clay till depth profile comprising plow layer soil, preferential flow paths (biopores and the tectonic fractures below), and matrix sediments, down to 350 cm below the surface. A recently developed expansion of the porous surface model (PSM) was used to capture bacterial communities dispersing under controlled hydration conditions on a soil-like surface. All five communities contained bacteria capable of active dispersal under relatively low hydration conditions (−3.1 kPa). Further testing of the plow layer community revealed active dispersal even at matric potentials of −6.3 to −8.4 kPa, previously thought to be too dry for dispersal on the PSM. Using 16S rRNA gene amplicon sequencing, the dispersing communities were found to be less diverse than their corresponding total communities. The dominant dispersers in most compartments belonged to the genus Pseudomonas and, in the plow layer soil, to Rahnella as well. An exception to this was the dispersing community in the matrix at 350 cm below the surface, which was dominated by Pantoea. Hydrologically connected compartments shared proportionally more dispersing than nondispersing amplicon sequence variants (ASVs), suggesting that active dispersal is important for colonizing these compartments. These results highlight the importance of including soil profile heterogeneity when assessing the role of active dispersal and contribute to discerning the importance of active dispersal in the soil environment. IMPORTANCE The ability to disperse is considered essential for soil bacteria colonization and survival, yet very little is known about the dispersal ability of communities from different heterogeneous soil compartments. Important factors for dispersal are the thickness and connectivity of the liquid film between soil particles. The present results from a fractured clay till depth profile suggest that dispersal ability is common in various soil compartments and that most are dominated by a few dispersing taxa. Importantly, an increase in shared dispersers among the preferential flow paths of the clay till suggests that active dispersal plays a role in the successful colonization of these habitats.
format Online
Article
Text
id pubmed-6414393
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-64143932019-04-12 Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile Krüger, U. S. Dechesne, A. Bak, F. Badawi, N. Nybroe, O. Aamand, J. Appl Environ Microbiol Microbial Ecology This study assessed the dispersal of five bacterial communities from contrasting compartments along a fractured clay till depth profile comprising plow layer soil, preferential flow paths (biopores and the tectonic fractures below), and matrix sediments, down to 350 cm below the surface. A recently developed expansion of the porous surface model (PSM) was used to capture bacterial communities dispersing under controlled hydration conditions on a soil-like surface. All five communities contained bacteria capable of active dispersal under relatively low hydration conditions (−3.1 kPa). Further testing of the plow layer community revealed active dispersal even at matric potentials of −6.3 to −8.4 kPa, previously thought to be too dry for dispersal on the PSM. Using 16S rRNA gene amplicon sequencing, the dispersing communities were found to be less diverse than their corresponding total communities. The dominant dispersers in most compartments belonged to the genus Pseudomonas and, in the plow layer soil, to Rahnella as well. An exception to this was the dispersing community in the matrix at 350 cm below the surface, which was dominated by Pantoea. Hydrologically connected compartments shared proportionally more dispersing than nondispersing amplicon sequence variants (ASVs), suggesting that active dispersal is important for colonizing these compartments. These results highlight the importance of including soil profile heterogeneity when assessing the role of active dispersal and contribute to discerning the importance of active dispersal in the soil environment. IMPORTANCE The ability to disperse is considered essential for soil bacteria colonization and survival, yet very little is known about the dispersal ability of communities from different heterogeneous soil compartments. Important factors for dispersal are the thickness and connectivity of the liquid film between soil particles. The present results from a fractured clay till depth profile suggest that dispersal ability is common in various soil compartments and that most are dominated by a few dispersing taxa. Importantly, an increase in shared dispersers among the preferential flow paths of the clay till suggests that active dispersal plays a role in the successful colonization of these habitats. American Society for Microbiology 2019-03-06 /pmc/articles/PMC6414393/ /pubmed/30658975 http://dx.doi.org/10.1128/AEM.02658-18 Text en Copyright © 2019 Krüger et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Microbial Ecology
Krüger, U. S.
Dechesne, A.
Bak, F.
Badawi, N.
Nybroe, O.
Aamand, J.
Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
title Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
title_full Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
title_fullStr Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
title_full_unstemmed Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
title_short Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
title_sort bacterial dispersers along preferential flow paths of a clay till depth profile
topic Microbial Ecology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6414393/
https://www.ncbi.nlm.nih.gov/pubmed/30658975
http://dx.doi.org/10.1128/AEM.02658-18
work_keys_str_mv AT krugerus bacterialdispersersalongpreferentialflowpathsofaclaytilldepthprofile
AT dechesnea bacterialdispersersalongpreferentialflowpathsofaclaytilldepthprofile
AT bakf bacterialdispersersalongpreferentialflowpathsofaclaytilldepthprofile
AT badawin bacterialdispersersalongpreferentialflowpathsofaclaytilldepthprofile
AT nybroeo bacterialdispersersalongpreferentialflowpathsofaclaytilldepthprofile
AT aamandj bacterialdispersersalongpreferentialflowpathsofaclaytilldepthprofile