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Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production

In the present study, genomic analysis of a previously reported carbon dioxide (CO(2)) sequestering bacterium Serratia sp. ISTD04 was performed along with exopolysaccharide (EPS) production. Genomic analysis identified key and accessory enzymes responsible for CO(2) sequestration. EPS synthesis gene...

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Autores principales: Kumar, Manish, Kumar, Madan, Pandey, Ashok, Thakur, Indu Shekhar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6414628/
https://www.ncbi.nlm.nih.gov/pubmed/30862945
http://dx.doi.org/10.1038/s41598-019-41052-0
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author Kumar, Manish
Kumar, Madan
Pandey, Ashok
Thakur, Indu Shekhar
author_facet Kumar, Manish
Kumar, Madan
Pandey, Ashok
Thakur, Indu Shekhar
author_sort Kumar, Manish
collection PubMed
description In the present study, genomic analysis of a previously reported carbon dioxide (CO(2)) sequestering bacterium Serratia sp. ISTD04 was performed along with exopolysaccharide (EPS) production. Genomic analysis identified key and accessory enzymes responsible for CO(2) sequestration. EPS synthesis genes were discovered in the genome and identified 8 putative clusters responsible for lipopolysaccharide, stewartan, emulsan, polysaccharide B, capsular polysaccharide and fatty acid-saccharide production. The production of EPS was found to be 0.88 ± 0.08, 1.25 ± 0.13 and 1.44 ± 0.10 g L(−1) on glucose, bicarbonate (NaHCO(3)) and NaHCO(3) plus glucose respectively at pH 7.8. After optimizing process parameters, the EPS production increased more than 3 folds. The morphology of strain and elemental composition of EPS was characterized by SEM-EDX. The functional groups, monomer composition, linkage analysis and structure of purified EPS was characterized by FTIR, GC-MS and (1)H and (13)C NMR. Glucose, galactose, mannose and glucosamine are the monomers detected in the EPS. EPS was further applied for bioflocculation (kaolin test) and dye removal. The EPS showed 68% ± 0.9 flocculating activity and decolorized cationic dye acridine orange (80%) and crystal violet (95%). The results highlight CO(2) sequestration and EPS production potential of Serratia sp. ISTD04 that can be harnessed in future.
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spelling pubmed-64146282019-03-14 Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production Kumar, Manish Kumar, Madan Pandey, Ashok Thakur, Indu Shekhar Sci Rep Article In the present study, genomic analysis of a previously reported carbon dioxide (CO(2)) sequestering bacterium Serratia sp. ISTD04 was performed along with exopolysaccharide (EPS) production. Genomic analysis identified key and accessory enzymes responsible for CO(2) sequestration. EPS synthesis genes were discovered in the genome and identified 8 putative clusters responsible for lipopolysaccharide, stewartan, emulsan, polysaccharide B, capsular polysaccharide and fatty acid-saccharide production. The production of EPS was found to be 0.88 ± 0.08, 1.25 ± 0.13 and 1.44 ± 0.10 g L(−1) on glucose, bicarbonate (NaHCO(3)) and NaHCO(3) plus glucose respectively at pH 7.8. After optimizing process parameters, the EPS production increased more than 3 folds. The morphology of strain and elemental composition of EPS was characterized by SEM-EDX. The functional groups, monomer composition, linkage analysis and structure of purified EPS was characterized by FTIR, GC-MS and (1)H and (13)C NMR. Glucose, galactose, mannose and glucosamine are the monomers detected in the EPS. EPS was further applied for bioflocculation (kaolin test) and dye removal. The EPS showed 68% ± 0.9 flocculating activity and decolorized cationic dye acridine orange (80%) and crystal violet (95%). The results highlight CO(2) sequestration and EPS production potential of Serratia sp. ISTD04 that can be harnessed in future. Nature Publishing Group UK 2019-03-12 /pmc/articles/PMC6414628/ /pubmed/30862945 http://dx.doi.org/10.1038/s41598-019-41052-0 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kumar, Manish
Kumar, Madan
Pandey, Ashok
Thakur, Indu Shekhar
Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production
title Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production
title_full Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production
title_fullStr Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production
title_full_unstemmed Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production
title_short Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production
title_sort genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6414628/
https://www.ncbi.nlm.nih.gov/pubmed/30862945
http://dx.doi.org/10.1038/s41598-019-41052-0
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