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Classification of Melanocytic Lesions in Selected and Whole-Slide Images via Convolutional Neural Networks
Whole-slide images (WSIs) are a rich new source of biomedical imaging data. The use of automated systems to classify and segment WSIs has recently come to forefront of the pathology research community. While digital slides have obvious educational and clinical uses, their most exciting potential lie...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Medknow Publications & Media Pvt Ltd
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6415523/ https://www.ncbi.nlm.nih.gov/pubmed/30972224 http://dx.doi.org/10.4103/jpi.jpi_32_18 |
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author | Hart, Steven N. Flotte, William Norgan, Andrew P. Shah, Kabeer K. Buchan, Zachary R. Mounajjed, Taofic Flotte, Thomas J. |
author_facet | Hart, Steven N. Flotte, William Norgan, Andrew P. Shah, Kabeer K. Buchan, Zachary R. Mounajjed, Taofic Flotte, Thomas J. |
author_sort | Hart, Steven N. |
collection | PubMed |
description | Whole-slide images (WSIs) are a rich new source of biomedical imaging data. The use of automated systems to classify and segment WSIs has recently come to forefront of the pathology research community. While digital slides have obvious educational and clinical uses, their most exciting potential lies in the application of quantitative computational tools to automate search tasks, assist in classic diagnostic classification tasks, and improve prognosis and theranostics. An essential step in enabling these advancements is to apply advances in machine learning and artificial intelligence from other fields to previously inaccessible pathology datasets, thereby enabling the application of new technologies to solve persistent diagnostic challenges in pathology. Here, we applied convolutional neural networks to differentiate between two forms of melanocytic lesions (Spitz and conventional). Classification accuracy at the patch level was 99.0%–2% when applied to WSI. Importantly, when the model was trained without careful image curation by a pathologist, the training took significantly longer and had lower overall performance. These results highlight the utility of augmented human intelligence in digital pathology applications, and the critical role pathologists will play in the evolution of computational pathology algorithms. |
format | Online Article Text |
id | pubmed-6415523 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Medknow Publications & Media Pvt Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-64155232019-04-10 Classification of Melanocytic Lesions in Selected and Whole-Slide Images via Convolutional Neural Networks Hart, Steven N. Flotte, William Norgan, Andrew P. Shah, Kabeer K. Buchan, Zachary R. Mounajjed, Taofic Flotte, Thomas J. J Pathol Inform Research Article Whole-slide images (WSIs) are a rich new source of biomedical imaging data. The use of automated systems to classify and segment WSIs has recently come to forefront of the pathology research community. While digital slides have obvious educational and clinical uses, their most exciting potential lies in the application of quantitative computational tools to automate search tasks, assist in classic diagnostic classification tasks, and improve prognosis and theranostics. An essential step in enabling these advancements is to apply advances in machine learning and artificial intelligence from other fields to previously inaccessible pathology datasets, thereby enabling the application of new technologies to solve persistent diagnostic challenges in pathology. Here, we applied convolutional neural networks to differentiate between two forms of melanocytic lesions (Spitz and conventional). Classification accuracy at the patch level was 99.0%–2% when applied to WSI. Importantly, when the model was trained without careful image curation by a pathologist, the training took significantly longer and had lower overall performance. These results highlight the utility of augmented human intelligence in digital pathology applications, and the critical role pathologists will play in the evolution of computational pathology algorithms. Medknow Publications & Media Pvt Ltd 2019-02-20 /pmc/articles/PMC6415523/ /pubmed/30972224 http://dx.doi.org/10.4103/jpi.jpi_32_18 Text en Copyright: © 2019 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms. |
spellingShingle | Research Article Hart, Steven N. Flotte, William Norgan, Andrew P. Shah, Kabeer K. Buchan, Zachary R. Mounajjed, Taofic Flotte, Thomas J. Classification of Melanocytic Lesions in Selected and Whole-Slide Images via Convolutional Neural Networks |
title | Classification of Melanocytic Lesions in Selected and Whole-Slide Images via Convolutional Neural Networks |
title_full | Classification of Melanocytic Lesions in Selected and Whole-Slide Images via Convolutional Neural Networks |
title_fullStr | Classification of Melanocytic Lesions in Selected and Whole-Slide Images via Convolutional Neural Networks |
title_full_unstemmed | Classification of Melanocytic Lesions in Selected and Whole-Slide Images via Convolutional Neural Networks |
title_short | Classification of Melanocytic Lesions in Selected and Whole-Slide Images via Convolutional Neural Networks |
title_sort | classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6415523/ https://www.ncbi.nlm.nih.gov/pubmed/30972224 http://dx.doi.org/10.4103/jpi.jpi_32_18 |
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