Cargando…

Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea

microRNAs (miRNAs) are non-coding RNAs highly relevant as biomarkers for disease. A seminal study that explored the role of miRNAs in obstructive sleep apnea syndrome (OSA) demonstrated their usefulness in clinical management. Nevertheless, the miRNAs that may act as endogenous controls (ECs) have n...

Descripción completa

Detalles Bibliográficos
Autores principales: Santamaria-Martos, Fernando, Benítez, Ivan, Zapater, Andrea, Girón, Cristina, Pinilla, Lucía, Fernandez-Real, Jose Manuel, Barbé, Ferran, Ortega, Francisco Jose, Sánchez-de-la-Torre, Manuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6415855/
https://www.ncbi.nlm.nih.gov/pubmed/30865706
http://dx.doi.org/10.1371/journal.pone.0213622
_version_ 1783403247205089280
author Santamaria-Martos, Fernando
Benítez, Ivan
Zapater, Andrea
Girón, Cristina
Pinilla, Lucía
Fernandez-Real, Jose Manuel
Barbé, Ferran
Ortega, Francisco Jose
Sánchez-de-la-Torre, Manuel
author_facet Santamaria-Martos, Fernando
Benítez, Ivan
Zapater, Andrea
Girón, Cristina
Pinilla, Lucía
Fernandez-Real, Jose Manuel
Barbé, Ferran
Ortega, Francisco Jose
Sánchez-de-la-Torre, Manuel
author_sort Santamaria-Martos, Fernando
collection PubMed
description microRNAs (miRNAs) are non-coding RNAs highly relevant as biomarkers for disease. A seminal study that explored the role of miRNAs in obstructive sleep apnea syndrome (OSA) demonstrated their usefulness in clinical management. Nevertheless, the miRNAs that may act as endogenous controls (ECs) have not yet been established. The identification of ECs would contribute to the standardization of these biomarkers in OSA. The objective of the study is to identify miRNAs that can be used as ECs in OSA. We evaluated 100 patients divided into two different cohorts: a learning cohort of 10 non-OSA and 30 OSA patients, and a validation cohort (20 non-OSA and 40 OSA patients). In the learning cohort, a profile of 188 miRNAs was determined in plasma by TaqMan Low Density Array. The best EC candidates were identified by mean center+SD normalization and concordance correlation restricted normalization. The results were validated using NormFinder and geNorm to assess the stability of those ECs. Eight miRNAs were identified as EC candidates. The combination miRNA-106a/miRNA-186 was identified as the most stable among all candidates. We identified a set of ECs to be used in the determination of circulating miRNA in OSA that may contribute to the homogeneity of results.
format Online
Article
Text
id pubmed-6415855
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-64158552019-04-02 Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea Santamaria-Martos, Fernando Benítez, Ivan Zapater, Andrea Girón, Cristina Pinilla, Lucía Fernandez-Real, Jose Manuel Barbé, Ferran Ortega, Francisco Jose Sánchez-de-la-Torre, Manuel PLoS One Research Article microRNAs (miRNAs) are non-coding RNAs highly relevant as biomarkers for disease. A seminal study that explored the role of miRNAs in obstructive sleep apnea syndrome (OSA) demonstrated their usefulness in clinical management. Nevertheless, the miRNAs that may act as endogenous controls (ECs) have not yet been established. The identification of ECs would contribute to the standardization of these biomarkers in OSA. The objective of the study is to identify miRNAs that can be used as ECs in OSA. We evaluated 100 patients divided into two different cohorts: a learning cohort of 10 non-OSA and 30 OSA patients, and a validation cohort (20 non-OSA and 40 OSA patients). In the learning cohort, a profile of 188 miRNAs was determined in plasma by TaqMan Low Density Array. The best EC candidates were identified by mean center+SD normalization and concordance correlation restricted normalization. The results were validated using NormFinder and geNorm to assess the stability of those ECs. Eight miRNAs were identified as EC candidates. The combination miRNA-106a/miRNA-186 was identified as the most stable among all candidates. We identified a set of ECs to be used in the determination of circulating miRNA in OSA that may contribute to the homogeneity of results. Public Library of Science 2019-03-13 /pmc/articles/PMC6415855/ /pubmed/30865706 http://dx.doi.org/10.1371/journal.pone.0213622 Text en © 2019 Santamaria-Martos et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Santamaria-Martos, Fernando
Benítez, Ivan
Zapater, Andrea
Girón, Cristina
Pinilla, Lucía
Fernandez-Real, Jose Manuel
Barbé, Ferran
Ortega, Francisco Jose
Sánchez-de-la-Torre, Manuel
Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea
title Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea
title_full Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea
title_fullStr Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea
title_full_unstemmed Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea
title_short Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea
title_sort identification and validation of circulating mirnas as endogenous controls in obstructive sleep apnea
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6415855/
https://www.ncbi.nlm.nih.gov/pubmed/30865706
http://dx.doi.org/10.1371/journal.pone.0213622
work_keys_str_mv AT santamariamartosfernando identificationandvalidationofcirculatingmirnasasendogenouscontrolsinobstructivesleepapnea
AT benitezivan identificationandvalidationofcirculatingmirnasasendogenouscontrolsinobstructivesleepapnea
AT zapaterandrea identificationandvalidationofcirculatingmirnasasendogenouscontrolsinobstructivesleepapnea
AT gironcristina identificationandvalidationofcirculatingmirnasasendogenouscontrolsinobstructivesleepapnea
AT pinillalucia identificationandvalidationofcirculatingmirnasasendogenouscontrolsinobstructivesleepapnea
AT fernandezrealjosemanuel identificationandvalidationofcirculatingmirnasasendogenouscontrolsinobstructivesleepapnea
AT barbeferran identificationandvalidationofcirculatingmirnasasendogenouscontrolsinobstructivesleepapnea
AT ortegafranciscojose identificationandvalidationofcirculatingmirnasasendogenouscontrolsinobstructivesleepapnea
AT sanchezdelatorremanuel identificationandvalidationofcirculatingmirnasasendogenouscontrolsinobstructivesleepapnea