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Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea
microRNAs (miRNAs) are non-coding RNAs highly relevant as biomarkers for disease. A seminal study that explored the role of miRNAs in obstructive sleep apnea syndrome (OSA) demonstrated their usefulness in clinical management. Nevertheless, the miRNAs that may act as endogenous controls (ECs) have n...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6415855/ https://www.ncbi.nlm.nih.gov/pubmed/30865706 http://dx.doi.org/10.1371/journal.pone.0213622 |
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author | Santamaria-Martos, Fernando Benítez, Ivan Zapater, Andrea Girón, Cristina Pinilla, Lucía Fernandez-Real, Jose Manuel Barbé, Ferran Ortega, Francisco Jose Sánchez-de-la-Torre, Manuel |
author_facet | Santamaria-Martos, Fernando Benítez, Ivan Zapater, Andrea Girón, Cristina Pinilla, Lucía Fernandez-Real, Jose Manuel Barbé, Ferran Ortega, Francisco Jose Sánchez-de-la-Torre, Manuel |
author_sort | Santamaria-Martos, Fernando |
collection | PubMed |
description | microRNAs (miRNAs) are non-coding RNAs highly relevant as biomarkers for disease. A seminal study that explored the role of miRNAs in obstructive sleep apnea syndrome (OSA) demonstrated their usefulness in clinical management. Nevertheless, the miRNAs that may act as endogenous controls (ECs) have not yet been established. The identification of ECs would contribute to the standardization of these biomarkers in OSA. The objective of the study is to identify miRNAs that can be used as ECs in OSA. We evaluated 100 patients divided into two different cohorts: a learning cohort of 10 non-OSA and 30 OSA patients, and a validation cohort (20 non-OSA and 40 OSA patients). In the learning cohort, a profile of 188 miRNAs was determined in plasma by TaqMan Low Density Array. The best EC candidates were identified by mean center+SD normalization and concordance correlation restricted normalization. The results were validated using NormFinder and geNorm to assess the stability of those ECs. Eight miRNAs were identified as EC candidates. The combination miRNA-106a/miRNA-186 was identified as the most stable among all candidates. We identified a set of ECs to be used in the determination of circulating miRNA in OSA that may contribute to the homogeneity of results. |
format | Online Article Text |
id | pubmed-6415855 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-64158552019-04-02 Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea Santamaria-Martos, Fernando Benítez, Ivan Zapater, Andrea Girón, Cristina Pinilla, Lucía Fernandez-Real, Jose Manuel Barbé, Ferran Ortega, Francisco Jose Sánchez-de-la-Torre, Manuel PLoS One Research Article microRNAs (miRNAs) are non-coding RNAs highly relevant as biomarkers for disease. A seminal study that explored the role of miRNAs in obstructive sleep apnea syndrome (OSA) demonstrated their usefulness in clinical management. Nevertheless, the miRNAs that may act as endogenous controls (ECs) have not yet been established. The identification of ECs would contribute to the standardization of these biomarkers in OSA. The objective of the study is to identify miRNAs that can be used as ECs in OSA. We evaluated 100 patients divided into two different cohorts: a learning cohort of 10 non-OSA and 30 OSA patients, and a validation cohort (20 non-OSA and 40 OSA patients). In the learning cohort, a profile of 188 miRNAs was determined in plasma by TaqMan Low Density Array. The best EC candidates were identified by mean center+SD normalization and concordance correlation restricted normalization. The results were validated using NormFinder and geNorm to assess the stability of those ECs. Eight miRNAs were identified as EC candidates. The combination miRNA-106a/miRNA-186 was identified as the most stable among all candidates. We identified a set of ECs to be used in the determination of circulating miRNA in OSA that may contribute to the homogeneity of results. Public Library of Science 2019-03-13 /pmc/articles/PMC6415855/ /pubmed/30865706 http://dx.doi.org/10.1371/journal.pone.0213622 Text en © 2019 Santamaria-Martos et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Santamaria-Martos, Fernando Benítez, Ivan Zapater, Andrea Girón, Cristina Pinilla, Lucía Fernandez-Real, Jose Manuel Barbé, Ferran Ortega, Francisco Jose Sánchez-de-la-Torre, Manuel Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea |
title | Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea |
title_full | Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea |
title_fullStr | Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea |
title_full_unstemmed | Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea |
title_short | Identification and validation of circulating miRNAs as endogenous controls in obstructive sleep apnea |
title_sort | identification and validation of circulating mirnas as endogenous controls in obstructive sleep apnea |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6415855/ https://www.ncbi.nlm.nih.gov/pubmed/30865706 http://dx.doi.org/10.1371/journal.pone.0213622 |
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