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MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians
MOTIVATION: The volume and complexity of biological data increases rapidly. Many clinical professionals and biomedical researchers without a bioinformatics background are generating big ’-omics’ data, but do not always have the tools to manage, process or publicly share these data. RESULTS: Here we...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6419911/ https://www.ncbi.nlm.nih.gov/pubmed/30165396 http://dx.doi.org/10.1093/bioinformatics/bty742 |
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author | van der Velde, K Joeri Imhann, Floris Charbon, Bart Pang, Chao van Enckevort, David Slofstra, Mariska Barbieri, Ruggero Alberts, Rudi Hendriksen, Dennis Kelpin, Fleur de Haan, Mark de Boer, Tommy Haakma, Sido Stroomberg, Connor Scholtens, Salome van de Geijn, Gert-Jan Festen, Eleonora A M Weersma, Rinse K Swertz, Morris A |
author_facet | van der Velde, K Joeri Imhann, Floris Charbon, Bart Pang, Chao van Enckevort, David Slofstra, Mariska Barbieri, Ruggero Alberts, Rudi Hendriksen, Dennis Kelpin, Fleur de Haan, Mark de Boer, Tommy Haakma, Sido Stroomberg, Connor Scholtens, Salome van de Geijn, Gert-Jan Festen, Eleonora A M Weersma, Rinse K Swertz, Morris A |
author_sort | van der Velde, K Joeri |
collection | PubMed |
description | MOTIVATION: The volume and complexity of biological data increases rapidly. Many clinical professionals and biomedical researchers without a bioinformatics background are generating big ’-omics’ data, but do not always have the tools to manage, process or publicly share these data. RESULTS: Here we present MOLGENIS Research, an open-source web-application to collect, manage, analyze, visualize and share large and complex biomedical datasets, without the need for advanced bioinformatics skills. AVAILABILITY AND IMPLEMENTATION: MOLGENIS Research is freely available (open source software). It can be installed from source code (see http://github.com/molgenis), downloaded as a precompiled WAR file (for your own server), setup inside a Docker container (see http://molgenis.github.io), or requested as a Software-as-a-Service subscription. For a public demo instance and complete installation instructions see http://molgenis.org/research. |
format | Online Article Text |
id | pubmed-6419911 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-64199112019-03-20 MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians van der Velde, K Joeri Imhann, Floris Charbon, Bart Pang, Chao van Enckevort, David Slofstra, Mariska Barbieri, Ruggero Alberts, Rudi Hendriksen, Dennis Kelpin, Fleur de Haan, Mark de Boer, Tommy Haakma, Sido Stroomberg, Connor Scholtens, Salome van de Geijn, Gert-Jan Festen, Eleonora A M Weersma, Rinse K Swertz, Morris A Bioinformatics Applications Notes MOTIVATION: The volume and complexity of biological data increases rapidly. Many clinical professionals and biomedical researchers without a bioinformatics background are generating big ’-omics’ data, but do not always have the tools to manage, process or publicly share these data. RESULTS: Here we present MOLGENIS Research, an open-source web-application to collect, manage, analyze, visualize and share large and complex biomedical datasets, without the need for advanced bioinformatics skills. AVAILABILITY AND IMPLEMENTATION: MOLGENIS Research is freely available (open source software). It can be installed from source code (see http://github.com/molgenis), downloaded as a precompiled WAR file (for your own server), setup inside a Docker container (see http://molgenis.github.io), or requested as a Software-as-a-Service subscription. For a public demo instance and complete installation instructions see http://molgenis.org/research. Oxford University Press 2019-03-15 2018-08-26 /pmc/articles/PMC6419911/ /pubmed/30165396 http://dx.doi.org/10.1093/bioinformatics/bty742 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes van der Velde, K Joeri Imhann, Floris Charbon, Bart Pang, Chao van Enckevort, David Slofstra, Mariska Barbieri, Ruggero Alberts, Rudi Hendriksen, Dennis Kelpin, Fleur de Haan, Mark de Boer, Tommy Haakma, Sido Stroomberg, Connor Scholtens, Salome van de Geijn, Gert-Jan Festen, Eleonora A M Weersma, Rinse K Swertz, Morris A MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians |
title | MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians |
title_full | MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians |
title_fullStr | MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians |
title_full_unstemmed | MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians |
title_short | MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians |
title_sort | molgenis research: advanced bioinformatics data software for non-bioinformaticians |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6419911/ https://www.ncbi.nlm.nih.gov/pubmed/30165396 http://dx.doi.org/10.1093/bioinformatics/bty742 |
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