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Early esophageal adenocarcinoma detection using deep learning methods

PURPOSE: This study aims to adapt and evaluate the performance of different state-of-the-art deep learning object detection methods to automatically identify esophageal adenocarcinoma (EAC) regions from high-definition white light endoscopy (HD-WLE) images. METHOD: Several state-of-the-art object de...

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Autores principales: Ghatwary, Noha, Zolgharni, Massoud, Ye, Xujiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6420905/
https://www.ncbi.nlm.nih.gov/pubmed/30666547
http://dx.doi.org/10.1007/s11548-019-01914-4
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author Ghatwary, Noha
Zolgharni, Massoud
Ye, Xujiong
author_facet Ghatwary, Noha
Zolgharni, Massoud
Ye, Xujiong
author_sort Ghatwary, Noha
collection PubMed
description PURPOSE: This study aims to adapt and evaluate the performance of different state-of-the-art deep learning object detection methods to automatically identify esophageal adenocarcinoma (EAC) regions from high-definition white light endoscopy (HD-WLE) images. METHOD: Several state-of-the-art object detection methods using Convolutional Neural Networks (CNNs) were adapted to automatically detect abnormal regions in the esophagus HD-WLE images, utilizing VGG’16 as the backbone architecture for feature extraction. Those methods are Regional-based Convolutional Neural Network (R-CNN), Fast R-CNN, Faster R-CNN and Single-Shot Multibox Detector (SSD). For the evaluation of the different methods, 100 images from 39 patients that have been manually annotated by five experienced clinicians as ground truth have been tested. RESULTS: Experimental results illustrate that the SSD and Faster R-CNN networks show promising results, and the SSD outperforms other methods achieving a sensitivity of 0.96, specificity of 0.92 and F-measure of 0.94. Additionally, the Average Recall Rate of the Faster R-CNN in locating the EAC region accurately is 0.83. CONCLUSION: In this paper, recent deep learning object detection methods are adapted to detect esophageal abnormalities automatically. The evaluation of the methods proved its ability to locate abnormal regions in the esophagus from endoscopic images. The automatic detection is a crucial step that may help early detection and treatment of EAC and also can improve automatic tumor segmentation to monitor its growth and treatment outcome.
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spelling pubmed-64209052019-04-03 Early esophageal adenocarcinoma detection using deep learning methods Ghatwary, Noha Zolgharni, Massoud Ye, Xujiong Int J Comput Assist Radiol Surg Original Article PURPOSE: This study aims to adapt and evaluate the performance of different state-of-the-art deep learning object detection methods to automatically identify esophageal adenocarcinoma (EAC) regions from high-definition white light endoscopy (HD-WLE) images. METHOD: Several state-of-the-art object detection methods using Convolutional Neural Networks (CNNs) were adapted to automatically detect abnormal regions in the esophagus HD-WLE images, utilizing VGG’16 as the backbone architecture for feature extraction. Those methods are Regional-based Convolutional Neural Network (R-CNN), Fast R-CNN, Faster R-CNN and Single-Shot Multibox Detector (SSD). For the evaluation of the different methods, 100 images from 39 patients that have been manually annotated by five experienced clinicians as ground truth have been tested. RESULTS: Experimental results illustrate that the SSD and Faster R-CNN networks show promising results, and the SSD outperforms other methods achieving a sensitivity of 0.96, specificity of 0.92 and F-measure of 0.94. Additionally, the Average Recall Rate of the Faster R-CNN in locating the EAC region accurately is 0.83. CONCLUSION: In this paper, recent deep learning object detection methods are adapted to detect esophageal abnormalities automatically. The evaluation of the methods proved its ability to locate abnormal regions in the esophagus from endoscopic images. The automatic detection is a crucial step that may help early detection and treatment of EAC and also can improve automatic tumor segmentation to monitor its growth and treatment outcome. Springer International Publishing 2019-01-22 2019 /pmc/articles/PMC6420905/ /pubmed/30666547 http://dx.doi.org/10.1007/s11548-019-01914-4 Text en © The Author(s) 2019 OpenAccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Ghatwary, Noha
Zolgharni, Massoud
Ye, Xujiong
Early esophageal adenocarcinoma detection using deep learning methods
title Early esophageal adenocarcinoma detection using deep learning methods
title_full Early esophageal adenocarcinoma detection using deep learning methods
title_fullStr Early esophageal adenocarcinoma detection using deep learning methods
title_full_unstemmed Early esophageal adenocarcinoma detection using deep learning methods
title_short Early esophageal adenocarcinoma detection using deep learning methods
title_sort early esophageal adenocarcinoma detection using deep learning methods
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6420905/
https://www.ncbi.nlm.nih.gov/pubmed/30666547
http://dx.doi.org/10.1007/s11548-019-01914-4
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