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InTool Explorer: An Interactive Exploratory Analysis Tool for Versatile Visualizations of Neuroscientific Data

The bottleneck for progress in many research areas within neuroscience has shifted from the data acquisition to the data analysis stages. In the present article, we propose a method named InTool Explorer that we have developed to perform interactive exploratory data analysis, focusing on neuroanatom...

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Autores principales: Furcila, Diana, García, Marcos, Toader, Cosmin, Morales, Juan, LaTorre, Antonio, Rodríguez, Ángel, Pastor, Luis, DeFelipe, Javier, Alonso-Nanclares, Lidia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6421977/
https://www.ncbi.nlm.nih.gov/pubmed/30914926
http://dx.doi.org/10.3389/fnana.2019.00028
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author Furcila, Diana
García, Marcos
Toader, Cosmin
Morales, Juan
LaTorre, Antonio
Rodríguez, Ángel
Pastor, Luis
DeFelipe, Javier
Alonso-Nanclares, Lidia
author_facet Furcila, Diana
García, Marcos
Toader, Cosmin
Morales, Juan
LaTorre, Antonio
Rodríguez, Ángel
Pastor, Luis
DeFelipe, Javier
Alonso-Nanclares, Lidia
author_sort Furcila, Diana
collection PubMed
description The bottleneck for progress in many research areas within neuroscience has shifted from the data acquisition to the data analysis stages. In the present article, we propose a method named InTool Explorer that we have developed to perform interactive exploratory data analysis, focusing on neuroanatomy as an example of its utility. This tool is freely-available software that has been designed to facilitate the study of complex neuroscience data. InTool Explorer requires no more than an internet connection and a web browser. The main contribution of this tool is to provide a user-designed canvas for data visualization and interaction, to perform specific exploratory tasks according to the user needs. Moreover, InTool Explorer permits visualization of the datasets in a very dynamic and versatile way using a linked-card approach. For this purpose, the tool allows the user to select among different predefined card types. Each card type offers an abstract data representation, a filtering tool or a set of statistical analysis methods. Additionally, InTool Explorer makes it possible linking raw images to the data. These images can be used by InTool Explorer to define new customized filtering cards. Another significant contribution of this tool is that it allows fast visualization of the data, error finding, and re-evaluation to establish new hypotheses or new lines of research. Thus, regarding its practical application in the laboratory, InTool Explorer provides a new opportunity to study and analyze neuroscience data prior to any statistical analysis being carried out.
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spelling pubmed-64219772019-03-26 InTool Explorer: An Interactive Exploratory Analysis Tool for Versatile Visualizations of Neuroscientific Data Furcila, Diana García, Marcos Toader, Cosmin Morales, Juan LaTorre, Antonio Rodríguez, Ángel Pastor, Luis DeFelipe, Javier Alonso-Nanclares, Lidia Front Neuroanat Neuroscience The bottleneck for progress in many research areas within neuroscience has shifted from the data acquisition to the data analysis stages. In the present article, we propose a method named InTool Explorer that we have developed to perform interactive exploratory data analysis, focusing on neuroanatomy as an example of its utility. This tool is freely-available software that has been designed to facilitate the study of complex neuroscience data. InTool Explorer requires no more than an internet connection and a web browser. The main contribution of this tool is to provide a user-designed canvas for data visualization and interaction, to perform specific exploratory tasks according to the user needs. Moreover, InTool Explorer permits visualization of the datasets in a very dynamic and versatile way using a linked-card approach. For this purpose, the tool allows the user to select among different predefined card types. Each card type offers an abstract data representation, a filtering tool or a set of statistical analysis methods. Additionally, InTool Explorer makes it possible linking raw images to the data. These images can be used by InTool Explorer to define new customized filtering cards. Another significant contribution of this tool is that it allows fast visualization of the data, error finding, and re-evaluation to establish new hypotheses or new lines of research. Thus, regarding its practical application in the laboratory, InTool Explorer provides a new opportunity to study and analyze neuroscience data prior to any statistical analysis being carried out. Frontiers Media S.A. 2019-03-11 /pmc/articles/PMC6421977/ /pubmed/30914926 http://dx.doi.org/10.3389/fnana.2019.00028 Text en Copyright © 2019 Furcila, García, Toader, Morales, LaTorre, Rodríguez, Pastor, DeFelipe and Alonso-Nanclares. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Furcila, Diana
García, Marcos
Toader, Cosmin
Morales, Juan
LaTorre, Antonio
Rodríguez, Ángel
Pastor, Luis
DeFelipe, Javier
Alonso-Nanclares, Lidia
InTool Explorer: An Interactive Exploratory Analysis Tool for Versatile Visualizations of Neuroscientific Data
title InTool Explorer: An Interactive Exploratory Analysis Tool for Versatile Visualizations of Neuroscientific Data
title_full InTool Explorer: An Interactive Exploratory Analysis Tool for Versatile Visualizations of Neuroscientific Data
title_fullStr InTool Explorer: An Interactive Exploratory Analysis Tool for Versatile Visualizations of Neuroscientific Data
title_full_unstemmed InTool Explorer: An Interactive Exploratory Analysis Tool for Versatile Visualizations of Neuroscientific Data
title_short InTool Explorer: An Interactive Exploratory Analysis Tool for Versatile Visualizations of Neuroscientific Data
title_sort intool explorer: an interactive exploratory analysis tool for versatile visualizations of neuroscientific data
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6421977/
https://www.ncbi.nlm.nih.gov/pubmed/30914926
http://dx.doi.org/10.3389/fnana.2019.00028
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