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Near real-time enumeration of live and dead bacteria using a fibre-based spectroscopic device

A rapid, cost-effective and easy method that allows on-site determination of the concentration of live and dead bacterial cells using a fibre-based spectroscopic device (the optrode system) is proposed and demonstrated. Identification of live and dead bacteria was achieved by using the commercially...

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Autores principales: Ou, Fang, McGoverin, Cushla, Swift, Simon, Vanholsbeeck, Frédérique
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6423134/
https://www.ncbi.nlm.nih.gov/pubmed/30886183
http://dx.doi.org/10.1038/s41598-019-41221-1
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author Ou, Fang
McGoverin, Cushla
Swift, Simon
Vanholsbeeck, Frédérique
author_facet Ou, Fang
McGoverin, Cushla
Swift, Simon
Vanholsbeeck, Frédérique
author_sort Ou, Fang
collection PubMed
description A rapid, cost-effective and easy method that allows on-site determination of the concentration of live and dead bacterial cells using a fibre-based spectroscopic device (the optrode system) is proposed and demonstrated. Identification of live and dead bacteria was achieved by using the commercially available dyes SYTO 9 and propidium iodide, and fluorescence spectra were measured by the optrode. Three spectral processing methods were evaluated for their effectiveness in predicting the original bacterial concentration in the samples: principal components regression (PCR), partial least squares regression (PLSR) and support vector regression (SVR). Without any sample pre-concentration, PCR achieved the most reliable results. It was able to quantify live bacteria from 10(8) down to 10(6.2) bacteria/mL and showed the potential to detect as low as 10(5.7) bacteria/mL. Meanwhile, enumeration of dead bacteria using PCR was achieved between 10(8) and 10(7) bacteria/mL. The general procedures described in this article can be applied or modified for the enumeration of bacteria within populations stained with fluorescent dyes. The optrode is a promising device for the enumeration of live and dead bacterial populations particularly where rapid, on-site measurement and analysis is required.
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spelling pubmed-64231342019-03-26 Near real-time enumeration of live and dead bacteria using a fibre-based spectroscopic device Ou, Fang McGoverin, Cushla Swift, Simon Vanholsbeeck, Frédérique Sci Rep Article A rapid, cost-effective and easy method that allows on-site determination of the concentration of live and dead bacterial cells using a fibre-based spectroscopic device (the optrode system) is proposed and demonstrated. Identification of live and dead bacteria was achieved by using the commercially available dyes SYTO 9 and propidium iodide, and fluorescence spectra were measured by the optrode. Three spectral processing methods were evaluated for their effectiveness in predicting the original bacterial concentration in the samples: principal components regression (PCR), partial least squares regression (PLSR) and support vector regression (SVR). Without any sample pre-concentration, PCR achieved the most reliable results. It was able to quantify live bacteria from 10(8) down to 10(6.2) bacteria/mL and showed the potential to detect as low as 10(5.7) bacteria/mL. Meanwhile, enumeration of dead bacteria using PCR was achieved between 10(8) and 10(7) bacteria/mL. The general procedures described in this article can be applied or modified for the enumeration of bacteria within populations stained with fluorescent dyes. The optrode is a promising device for the enumeration of live and dead bacterial populations particularly where rapid, on-site measurement and analysis is required. Nature Publishing Group UK 2019-03-18 /pmc/articles/PMC6423134/ /pubmed/30886183 http://dx.doi.org/10.1038/s41598-019-41221-1 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ou, Fang
McGoverin, Cushla
Swift, Simon
Vanholsbeeck, Frédérique
Near real-time enumeration of live and dead bacteria using a fibre-based spectroscopic device
title Near real-time enumeration of live and dead bacteria using a fibre-based spectroscopic device
title_full Near real-time enumeration of live and dead bacteria using a fibre-based spectroscopic device
title_fullStr Near real-time enumeration of live and dead bacteria using a fibre-based spectroscopic device
title_full_unstemmed Near real-time enumeration of live and dead bacteria using a fibre-based spectroscopic device
title_short Near real-time enumeration of live and dead bacteria using a fibre-based spectroscopic device
title_sort near real-time enumeration of live and dead bacteria using a fibre-based spectroscopic device
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6423134/
https://www.ncbi.nlm.nih.gov/pubmed/30886183
http://dx.doi.org/10.1038/s41598-019-41221-1
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