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Comprehensive circular RNA expression profiles in a mouse model of nonalcoholic steatohepatitis
Recent studies have revealed that circular RNAs (circRNAs) are involved in the development of various liver diseases. However, the regulatory role of circRNAs in nonalcoholic steatohepatitis (NASH) has not been fully elucidated. In the present study, the circRNA profiles in a NASH mouse model were i...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6423634/ https://www.ncbi.nlm.nih.gov/pubmed/30720095 http://dx.doi.org/10.3892/mmr.2019.9935 |
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author | Ou, Qiang Zhao, Yajuan Zhou, Jianhua Wu, Xiaolin |
author_facet | Ou, Qiang Zhao, Yajuan Zhou, Jianhua Wu, Xiaolin |
author_sort | Ou, Qiang |
collection | PubMed |
description | Recent studies have revealed that circular RNAs (circRNAs) are involved in the development of various liver diseases. However, the regulatory role of circRNAs in nonalcoholic steatohepatitis (NASH) has not been fully elucidated. In the present study, the circRNA profiles in a NASH mouse model were investigated, and their functions in NASH were predicted using bioinformatics analysis, with the aim of providing novel clues for delineating the mechanisms of action. A NASH mouse model was established by feeding mice with a methionine and choline-deficient diet. The liver circRNA profile was screened using a circRNA microarray, and the differentially expressed circRNAs were verified by reverse transcription-quantitative polymerase chain reaction. Subsequently, circRNA-microRNA (miRNA) interactions were predicted. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to annotate the biological functions of host linear transcripts of circRNA. A total of 450 circRNAs were revealed to be dysregulated, with 298 circRNAs upregulated and 152 circRNAs downregulated in the NASH model mice. circRNA_29981 was identified as a significantly differentially expressed circRNA. The results from the circRNA-miRNA pathway interaction analysis revealed that circRNA_29981 was a potential regulator of hepatic stellate cell activation. The host linear transcripts were also analyzed, and the top 10 enriched GO entries and KEGG pathways were annotated. These findings suggested that circRNAs may be important regulators of NASH. Taken together, the results of the present study demonstrated that the circRNA profile in NASH may provide potential candidates for future studies aimed at elucidating the pathogenic mechanism(s) involved in the disease. |
format | Online Article Text |
id | pubmed-6423634 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-64236342019-03-22 Comprehensive circular RNA expression profiles in a mouse model of nonalcoholic steatohepatitis Ou, Qiang Zhao, Yajuan Zhou, Jianhua Wu, Xiaolin Mol Med Rep Articles Recent studies have revealed that circular RNAs (circRNAs) are involved in the development of various liver diseases. However, the regulatory role of circRNAs in nonalcoholic steatohepatitis (NASH) has not been fully elucidated. In the present study, the circRNA profiles in a NASH mouse model were investigated, and their functions in NASH were predicted using bioinformatics analysis, with the aim of providing novel clues for delineating the mechanisms of action. A NASH mouse model was established by feeding mice with a methionine and choline-deficient diet. The liver circRNA profile was screened using a circRNA microarray, and the differentially expressed circRNAs were verified by reverse transcription-quantitative polymerase chain reaction. Subsequently, circRNA-microRNA (miRNA) interactions were predicted. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to annotate the biological functions of host linear transcripts of circRNA. A total of 450 circRNAs were revealed to be dysregulated, with 298 circRNAs upregulated and 152 circRNAs downregulated in the NASH model mice. circRNA_29981 was identified as a significantly differentially expressed circRNA. The results from the circRNA-miRNA pathway interaction analysis revealed that circRNA_29981 was a potential regulator of hepatic stellate cell activation. The host linear transcripts were also analyzed, and the top 10 enriched GO entries and KEGG pathways were annotated. These findings suggested that circRNAs may be important regulators of NASH. Taken together, the results of the present study demonstrated that the circRNA profile in NASH may provide potential candidates for future studies aimed at elucidating the pathogenic mechanism(s) involved in the disease. D.A. Spandidos 2019-04 2019-02-05 /pmc/articles/PMC6423634/ /pubmed/30720095 http://dx.doi.org/10.3892/mmr.2019.9935 Text en Copyright: © Ou et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Ou, Qiang Zhao, Yajuan Zhou, Jianhua Wu, Xiaolin Comprehensive circular RNA expression profiles in a mouse model of nonalcoholic steatohepatitis |
title | Comprehensive circular RNA expression profiles in a mouse model of nonalcoholic steatohepatitis |
title_full | Comprehensive circular RNA expression profiles in a mouse model of nonalcoholic steatohepatitis |
title_fullStr | Comprehensive circular RNA expression profiles in a mouse model of nonalcoholic steatohepatitis |
title_full_unstemmed | Comprehensive circular RNA expression profiles in a mouse model of nonalcoholic steatohepatitis |
title_short | Comprehensive circular RNA expression profiles in a mouse model of nonalcoholic steatohepatitis |
title_sort | comprehensive circular rna expression profiles in a mouse model of nonalcoholic steatohepatitis |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6423634/ https://www.ncbi.nlm.nih.gov/pubmed/30720095 http://dx.doi.org/10.3892/mmr.2019.9935 |
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