Cargando…

Evolution and Comprehensive Analysis of DNaseI Hypersensitive Sites in Regulatory Regions of Primate Brain-Related Genes

How the human brain differs from those of non-human primates is largely unknown and the complex drivers underlying such differences at the genomic level remain unclear. In this study, we selected 243 brain-related genes, based on Gene Ontology, and identified 184,113 DNaseI hypersensitive sites (DHS...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lu, Yueer, Wang, Xiao, Yu, Hang, Li, Jianlin, Jiang, Zhiqiang, Chen, Bangwei, Lu, Yueqi, Wang, Wei, Han, Chongyin, Ouyang, Ying, Huang, Lizhen, Chen, Chunbo, Tian, Weidong, Ling, Fei
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2019
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6423895/ https://www.ncbi.nlm.nih.gov/pubmed/30930929 http://dx.doi.org/10.3389/fgene.2019.00152

Ejemplares similares

Transposable element derived DNaseI-hypersensitive sites in the human genome
por: Mariño-Ramírez, Leonardo, et al.
Publicado: (2006)

Analysis of Mice Lacking DNaseI Hypersensitive Sites at the 5′ End of the IgH Locus
por: Perlot, Thomas, et al.
Publicado: (2010)

DNaseI hypersensitivity at gene-poor, FSH dystrophy-linked 4q35.2
por: Xu, Xueqing, et al.
Publicado: (2009)

DNaseI Hypersensitivity and Ultraconservation Reveal Novel, Interdependent Long-Range Enhancers at the Complex Pax6 Cis-Regulatory Region
por: McBride, David J., et al.
Publicado: (2011)

TNFα Amplifies DNaseI Expression in Renal Tubular Cells while IL-1β Promotes Nuclear DNaseI Translocation in an Endonuclease-Inactive Form
por: Thiyagarajan, Dhivya, et al.
Publicado: (2015)

Real-time PCR mapping of DNaseI-hypersensitive sites using a novel ligation-mediated amplification technique
por: Follows, George A., et al.
Publicado: (2007)

Epigenetics of a tandem DNA repeat: chromatin DNaseI sensitivity and opposite methylation changes in cancers
por: Tsumagari, Koji, et al.
Publicado: (2008)

Genome-wide mapping of DNase I hypersensitive sites in pineapple leaves
por: Ouyang, Kai, et al.
Publicado: (2023)

DNaseI sensitivity QTLs are a major determinant of human expression variation
por: Degner, Jacob F., et al.
Publicado: (2012)

Rapid high-throughput analysis of DNaseI hypersensitive sites using a modified Multiplex Ligation-dependent Probe Amplification approach
por: Ohnesorg, Thomas, et al.
Publicado: (2009)

Current bioinformatic approaches to identify DNase I hypersensitive sites and genomic footprints from DNase-seq data
por: Madrigal, Pedro, et al.
Publicado: (2012)

DNaseI Protects against Paraquat-Induced Acute Lung Injury and Pulmonary Fibrosis Mediated by Mitochondrial DNA
por: Li, Guo, et al.
Publicado: (2015)

Enhancement of DNaseI Salt Tolerance by Mimicking the Domain Structure of DNase from an Extremely Halotolerant Bacterium Thioalkalivibrio sp. K90mix
por: Alzbutas, Gediminas, et al.
Publicado: (2016)

PeaKDEck: a kernel density estimator-based peak calling program for DNaseI-seq data
por: McCarthy, Michael T., et al.
Publicado: (2014)

Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains
por: Shu, Wenjie, et al.
Publicado: (2011)

The biofilm matrix destabilizers, EDTA and DNaseI, enhance the susceptibility of nontypeable Hemophilus influenzae biofilms to treatment with ampicillin and ciprofloxacin
por: Cavaliere, Rosalia, et al.
Publicado: (2014)

Genome-wide mapping of DNase I hypersensitive sites and association analysis with gene expression in MSB1 cells
por: He, Yanghua, et al.
Publicado: (2014)

Bladder cancer patients have increased NETosis and impaired DNaseI-mediated NET degradation that can be therapeutically restored in vitro
por: Herranz, Raquel, et al.
Publicado: (2023)

Unveiling the gene regulatory landscape in diseases through the identification of DNase I-hypersensitive sites
por: Chen, Ying, et al.
Publicado: (2019)

DNASE1L3 as a Novel Diagnostic and Prognostic Biomarker for Lung Adenocarcinoma Based on Data Mining
por: Chen, Jianlin, et al.
Publicado: (2021)

Silencing of Renal DNaseI in Murine Lupus Nephritis Imposes Exposure of Large Chromatin Fragments and Activation of Toll Like Receptors and the Clec4e
por: Thiyagarajan, Dhivya, et al.
Publicado: (2012)

Deep learning for DNase I hypersensitive sites identification
por: Lyu, Chuqiao, et al.
Publicado: (2018)

Identifying DNase I hypersensitive sites as driver distal regulatory elements in breast cancer
por: D′Antonio, Matteo, et al.
Publicado: (2017)

A closer look into DNase I hypersensitivity
por: He, Housheng Hansen, et al.
Publicado: (2013)

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites
por: Shi, Baochen, et al.
Publicado: (2009)

Characterization of a pathogenic variant in GBA for Parkinson’s disease with mild cognitive impairment patients
por: Jiang, Zhiqiang, et al.
Publicado: (2020)

Comparative evaluation of DNase-seq footprint identification strategies
por: Barozzi, Iros, et al.
Publicado: (2014)

DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements
por: Wilken, Matthew S, et al.
Publicado: (2015)

Corrigendum: Comparative evaluation of DNase-seq footprint identification strategies
por: Barozzi, Iros, et al.
Publicado: (2014)

Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics
por: He, Housheng Hansen, et al.
Publicado: (2012)

Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers
por: Malin, Justin, et al.
Publicado: (2013)

Index and biological spectrum of human DNase I hypersensitive sites
por: Meuleman, Wouter, et al.
Publicado: (2020)

Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana
por: Cumbie, Jason S., et al.
Publicado: (2015)

Cas9-mediated excision of proximal DNaseI/H3K4me3 signatures confers robust silencing of microRNA and long non-coding RNA genes
por: Janga, Harshavardhan, et al.
Publicado: (2018)

Prediction of DNase I Hypersensitive Sites by Using Pseudo Nucleotide Compositions
por: Feng, Pengmian, et al.
Publicado: (2014)

PlantDHS: a database for DNase I hypersensitive sites in plants
por: Zhang, Tao, et al.
Publicado: (2016)

Genome-wide prediction of DNase I hypersensitivity using gene expression
por: Zhou, Weiqiang, et al.
Publicado: (2017)

Understanding Transcription Factor Regulation by Integrating Gene Expression and DNase I Hypersensitive Sites
por: Wang, Guohua, et al.
Publicado: (2015)

Rapid and Unambiguous Detection of DNase I Hypersensitive Site in Rare Population of Cells
por: Zeng, Wei-ping, et al.
Publicado: (2014)

Multiplex indexing approach for the detection of DNase I hypersensitive sites in single cells
por: Gao, Weiwu, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_mhta23a28fjtknaej5rhh9n7b1