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Calculation Method for Phenotypic Traits Based on the 3D Reconstruction of Maize Canopies

A reasonable plant type is an essential factor for improving canopy structure, ensuring a reasonable expansion of the leaf area index and obtaining a high-quality spatial distribution of light. It is of great significance in promoting effective selection of the ecological breeding index and producti...

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Autores principales: Ma, Xiaodan, Zhu, Kexin, Guan, Haiou, Feng, Jiarui, Yu, Song, Liu, Gang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6427596/
https://www.ncbi.nlm.nih.gov/pubmed/30857269
http://dx.doi.org/10.3390/s19051201
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author Ma, Xiaodan
Zhu, Kexin
Guan, Haiou
Feng, Jiarui
Yu, Song
Liu, Gang
author_facet Ma, Xiaodan
Zhu, Kexin
Guan, Haiou
Feng, Jiarui
Yu, Song
Liu, Gang
author_sort Ma, Xiaodan
collection PubMed
description A reasonable plant type is an essential factor for improving canopy structure, ensuring a reasonable expansion of the leaf area index and obtaining a high-quality spatial distribution of light. It is of great significance in promoting effective selection of the ecological breeding index and production practices for maize. In this study, a method for calculating the phenotypic traits of the maize canopy in three-dimensional (3D) space was proposed, focusing on the problems existing in traditional measurement methods in maize morphological structure research, such as their complex procedures and relatively large error margins. Specifically, the whole maize plant was first scanned with a FastSCAN hand-held scanner to obtain 3D point cloud data for maize. Subsequently, the raw point clouds were simplified by the grid method, and the effect of noise on the quality of the point clouds in maize canopies was further denoised by bilateral filtering. In the last step, the 3D structure of the maize canopy was reconstructed. In accordance with the 3D reconstruction of the maize canopy, the phenotypic traits of the maize canopy, such as plant height, stem diameter and canopy breadth, were calculated by means of a fitting sphere and a fitting cylinder. Thereafter, multiple regression analysis was carried out, focusing on the calculated data and the actual measured data to verify the accuracy of the calculation method proposed in this study. The corresponding results showed that the calculated values of plant height, stem diameter and plant width based on 3D scanning were highly correlated with the actual measured data, and the determinant coefficients R(2) were 0.9807, 0.8907 and 0.9562, respectively. In summary, the method proposed in this study can accurately measure the phenotypic traits of maize. Significantly, these research findings provide technical support for further research on the phenotypic traits of other crops and on variety breeding.
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spelling pubmed-64275962019-04-15 Calculation Method for Phenotypic Traits Based on the 3D Reconstruction of Maize Canopies Ma, Xiaodan Zhu, Kexin Guan, Haiou Feng, Jiarui Yu, Song Liu, Gang Sensors (Basel) Article A reasonable plant type is an essential factor for improving canopy structure, ensuring a reasonable expansion of the leaf area index and obtaining a high-quality spatial distribution of light. It is of great significance in promoting effective selection of the ecological breeding index and production practices for maize. In this study, a method for calculating the phenotypic traits of the maize canopy in three-dimensional (3D) space was proposed, focusing on the problems existing in traditional measurement methods in maize morphological structure research, such as their complex procedures and relatively large error margins. Specifically, the whole maize plant was first scanned with a FastSCAN hand-held scanner to obtain 3D point cloud data for maize. Subsequently, the raw point clouds were simplified by the grid method, and the effect of noise on the quality of the point clouds in maize canopies was further denoised by bilateral filtering. In the last step, the 3D structure of the maize canopy was reconstructed. In accordance with the 3D reconstruction of the maize canopy, the phenotypic traits of the maize canopy, such as plant height, stem diameter and canopy breadth, were calculated by means of a fitting sphere and a fitting cylinder. Thereafter, multiple regression analysis was carried out, focusing on the calculated data and the actual measured data to verify the accuracy of the calculation method proposed in this study. The corresponding results showed that the calculated values of plant height, stem diameter and plant width based on 3D scanning were highly correlated with the actual measured data, and the determinant coefficients R(2) were 0.9807, 0.8907 and 0.9562, respectively. In summary, the method proposed in this study can accurately measure the phenotypic traits of maize. Significantly, these research findings provide technical support for further research on the phenotypic traits of other crops and on variety breeding. MDPI 2019-03-08 /pmc/articles/PMC6427596/ /pubmed/30857269 http://dx.doi.org/10.3390/s19051201 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ma, Xiaodan
Zhu, Kexin
Guan, Haiou
Feng, Jiarui
Yu, Song
Liu, Gang
Calculation Method for Phenotypic Traits Based on the 3D Reconstruction of Maize Canopies
title Calculation Method for Phenotypic Traits Based on the 3D Reconstruction of Maize Canopies
title_full Calculation Method for Phenotypic Traits Based on the 3D Reconstruction of Maize Canopies
title_fullStr Calculation Method for Phenotypic Traits Based on the 3D Reconstruction of Maize Canopies
title_full_unstemmed Calculation Method for Phenotypic Traits Based on the 3D Reconstruction of Maize Canopies
title_short Calculation Method for Phenotypic Traits Based on the 3D Reconstruction of Maize Canopies
title_sort calculation method for phenotypic traits based on the 3d reconstruction of maize canopies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6427596/
https://www.ncbi.nlm.nih.gov/pubmed/30857269
http://dx.doi.org/10.3390/s19051201
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