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Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features

Gliomas have the highest mortality rate and prevalence among the primary brain tumors. In this study, we proposed a supervised brain tumor segmentation method which detects diverse tumoral structures of both high grade gliomas and low grade gliomas in magnetic resonance imaging (MRI) images based on...

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Autores principales: Zhao, Junting, Meng, Zhaopeng, Wei, Leyi, Sun, Changming, Zou, Quan, Su, Ran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6427904/
https://www.ncbi.nlm.nih.gov/pubmed/30930729
http://dx.doi.org/10.3389/fnins.2019.00144
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author Zhao, Junting
Meng, Zhaopeng
Wei, Leyi
Sun, Changming
Zou, Quan
Su, Ran
author_facet Zhao, Junting
Meng, Zhaopeng
Wei, Leyi
Sun, Changming
Zou, Quan
Su, Ran
author_sort Zhao, Junting
collection PubMed
description Gliomas have the highest mortality rate and prevalence among the primary brain tumors. In this study, we proposed a supervised brain tumor segmentation method which detects diverse tumoral structures of both high grade gliomas and low grade gliomas in magnetic resonance imaging (MRI) images based on two types of features, the gradient features and the context-sensitive features. Two-dimensional gradient and three-dimensional gradient information was fully utilized to capture the gradient change. Furthermore, we proposed a circular context-sensitive feature which captures context information effectively. These features, totally 62, were compressed and optimized based on an mRMR algorithm, and random forest was used to classify voxels based on the compact feature set. To overcome the class-imbalanced problem of MRI data, our model was trained on a class-balanced region of interest dataset. We evaluated the proposed method based on the 2015 Brain Tumor Segmentation Challenge database, and the experimental results show a competitive performance.
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spelling pubmed-64279042019-03-29 Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features Zhao, Junting Meng, Zhaopeng Wei, Leyi Sun, Changming Zou, Quan Su, Ran Front Neurosci Neuroscience Gliomas have the highest mortality rate and prevalence among the primary brain tumors. In this study, we proposed a supervised brain tumor segmentation method which detects diverse tumoral structures of both high grade gliomas and low grade gliomas in magnetic resonance imaging (MRI) images based on two types of features, the gradient features and the context-sensitive features. Two-dimensional gradient and three-dimensional gradient information was fully utilized to capture the gradient change. Furthermore, we proposed a circular context-sensitive feature which captures context information effectively. These features, totally 62, were compressed and optimized based on an mRMR algorithm, and random forest was used to classify voxels based on the compact feature set. To overcome the class-imbalanced problem of MRI data, our model was trained on a class-balanced region of interest dataset. We evaluated the proposed method based on the 2015 Brain Tumor Segmentation Challenge database, and the experimental results show a competitive performance. Frontiers Media S.A. 2019-03-14 /pmc/articles/PMC6427904/ /pubmed/30930729 http://dx.doi.org/10.3389/fnins.2019.00144 Text en Copyright © 2019 Zhao, Meng, Wei, Sun, Zou and Su. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Zhao, Junting
Meng, Zhaopeng
Wei, Leyi
Sun, Changming
Zou, Quan
Su, Ran
Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features
title Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features
title_full Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features
title_fullStr Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features
title_full_unstemmed Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features
title_short Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features
title_sort supervised brain tumor segmentation based on gradient and context-sensitive features
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6427904/
https://www.ncbi.nlm.nih.gov/pubmed/30930729
http://dx.doi.org/10.3389/fnins.2019.00144
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