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Genome sequence of the H(2)-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant

We report on the nearly complete genome sequence of Clostridium beijerinckii strain Br21, formerly isolated from a sugarcarne vinasse wastewater treatment plant. The resulting genome is ca. 5.9 Mbp in length and resembles the size of previously published C. beijerinckii genomes. We annotated the gen...

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Autores principales: Fonseca, Bruna Constante, Riaño-Pachón, Diego Mauricio, Guazzaroni, María-Eugenia, Reginatto, Valeria
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Sociedade Brasileira de Genética 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428130/
https://www.ncbi.nlm.nih.gov/pubmed/30730526
http://dx.doi.org/10.1590/1678-4685-GMB-2017-0315
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author Fonseca, Bruna Constante
Riaño-Pachón, Diego Mauricio
Guazzaroni, María-Eugenia
Reginatto, Valeria
author_facet Fonseca, Bruna Constante
Riaño-Pachón, Diego Mauricio
Guazzaroni, María-Eugenia
Reginatto, Valeria
author_sort Fonseca, Bruna Constante
collection PubMed
description We report on the nearly complete genome sequence of Clostridium beijerinckii strain Br21, formerly isolated from a sugarcarne vinasse wastewater treatment plant. The resulting genome is ca. 5.9 Mbp in length and resembles the size of previously published C. beijerinckii genomes. We annotated the genome sequence and predicted a total of 5323 genes. Strain Br21 has a genetic toolkit that allows it to exploit diverse sugars that are often found after lignocellulosic biomass pretreatment to yield products of commercial interest. Besides the whole set of genes encoding for enzymes underlying hydrogen production, the genome of the new strain includes genes that enable carbon sources conversion into butanol, ethanol, acetic acid, butyric acid, and the chemical block 1,3-propanediol, which is used to obtain polymers. Moreover, the genome of strain Br21 has a higher number of ORFs with predicted beta-glucosidase activity as compared to other C. beijerinckii strains described in the KEGG database. These characteristics make C. beijerinckii strain Br21 a remarkable candidate for direct use in biotechnological processes and attest that it is a potential biocatalyst supplier.
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spelling pubmed-64281302019-04-16 Genome sequence of the H(2)-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant Fonseca, Bruna Constante Riaño-Pachón, Diego Mauricio Guazzaroni, María-Eugenia Reginatto, Valeria Genet Mol Biol Genomics and Bioinformatics We report on the nearly complete genome sequence of Clostridium beijerinckii strain Br21, formerly isolated from a sugarcarne vinasse wastewater treatment plant. The resulting genome is ca. 5.9 Mbp in length and resembles the size of previously published C. beijerinckii genomes. We annotated the genome sequence and predicted a total of 5323 genes. Strain Br21 has a genetic toolkit that allows it to exploit diverse sugars that are often found after lignocellulosic biomass pretreatment to yield products of commercial interest. Besides the whole set of genes encoding for enzymes underlying hydrogen production, the genome of the new strain includes genes that enable carbon sources conversion into butanol, ethanol, acetic acid, butyric acid, and the chemical block 1,3-propanediol, which is used to obtain polymers. Moreover, the genome of strain Br21 has a higher number of ORFs with predicted beta-glucosidase activity as compared to other C. beijerinckii strains described in the KEGG database. These characteristics make C. beijerinckii strain Br21 a remarkable candidate for direct use in biotechnological processes and attest that it is a potential biocatalyst supplier. Sociedade Brasileira de Genética 2019-01-31 2019 /pmc/articles/PMC6428130/ /pubmed/30730526 http://dx.doi.org/10.1590/1678-4685-GMB-2017-0315 Text en Copyright © 2018, Sociedade Brasileira de Genética. https://creativecommons.org/licenses/by/4.0/ License information: This is an open-access article distributed under the terms of the Creative Commons Attribution License (type CC-BY), which permits unrestricted use, distribution and reproduction in any medium, provided the original article is properly cited.
spellingShingle Genomics and Bioinformatics
Fonseca, Bruna Constante
Riaño-Pachón, Diego Mauricio
Guazzaroni, María-Eugenia
Reginatto, Valeria
Genome sequence of the H(2)-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant
title Genome sequence of the H(2)-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant
title_full Genome sequence of the H(2)-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant
title_fullStr Genome sequence of the H(2)-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant
title_full_unstemmed Genome sequence of the H(2)-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant
title_short Genome sequence of the H(2)-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant
title_sort genome sequence of the h(2)-producing clostridium beijerinckii strain br21 isolated from a sugarcane vinasse treatment plant
topic Genomics and Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428130/
https://www.ncbi.nlm.nih.gov/pubmed/30730526
http://dx.doi.org/10.1590/1678-4685-GMB-2017-0315
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