Cargando…
Construction and Analysis of Protein-Protein Interaction Network of Heroin Use Disorder
Heroin use disorder (HUD) is a complex disease resulting from interactions among genetic and other factors (e.g., environmental factors). The mechanism of HUD development remains unknown. Newly developed network medicine tools provide a platform for exploring complex diseases at the system level. Th...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428805/ https://www.ncbi.nlm.nih.gov/pubmed/30899073 http://dx.doi.org/10.1038/s41598-019-41552-z |
_version_ | 1783405457967153152 |
---|---|
author | Chen, Shaw-Ji Liao, Ding-Lieh Chen, Chia-Hsiang Wang, Tse-Yi Chen, Kuang-Chi |
author_facet | Chen, Shaw-Ji Liao, Ding-Lieh Chen, Chia-Hsiang Wang, Tse-Yi Chen, Kuang-Chi |
author_sort | Chen, Shaw-Ji |
collection | PubMed |
description | Heroin use disorder (HUD) is a complex disease resulting from interactions among genetic and other factors (e.g., environmental factors). The mechanism of HUD development remains unknown. Newly developed network medicine tools provide a platform for exploring complex diseases at the system level. This study proposes that protein–protein interactions (PPIs), particularly those among proteins encoded by casual or susceptibility genes, are extremely crucial for HUD development. The giant component of our constructed PPI network comprised 111 nodes with 553 edges, including 16 proteins with large degree (k) or high betweenness centrality (BC), which were further identified as the backbone of the network. JUN with the largest degree was suggested to be central to the PPI network associated with HUD. Moreover, PCK1 with the highest BC and MAPK14 with the secondary largest degree and 9(th) highest BC might be involved in the development HUD and other substance diseases. |
format | Online Article Text |
id | pubmed-6428805 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-64288052019-03-28 Construction and Analysis of Protein-Protein Interaction Network of Heroin Use Disorder Chen, Shaw-Ji Liao, Ding-Lieh Chen, Chia-Hsiang Wang, Tse-Yi Chen, Kuang-Chi Sci Rep Article Heroin use disorder (HUD) is a complex disease resulting from interactions among genetic and other factors (e.g., environmental factors). The mechanism of HUD development remains unknown. Newly developed network medicine tools provide a platform for exploring complex diseases at the system level. This study proposes that protein–protein interactions (PPIs), particularly those among proteins encoded by casual or susceptibility genes, are extremely crucial for HUD development. The giant component of our constructed PPI network comprised 111 nodes with 553 edges, including 16 proteins with large degree (k) or high betweenness centrality (BC), which were further identified as the backbone of the network. JUN with the largest degree was suggested to be central to the PPI network associated with HUD. Moreover, PCK1 with the highest BC and MAPK14 with the secondary largest degree and 9(th) highest BC might be involved in the development HUD and other substance diseases. Nature Publishing Group UK 2019-03-21 /pmc/articles/PMC6428805/ /pubmed/30899073 http://dx.doi.org/10.1038/s41598-019-41552-z Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Chen, Shaw-Ji Liao, Ding-Lieh Chen, Chia-Hsiang Wang, Tse-Yi Chen, Kuang-Chi Construction and Analysis of Protein-Protein Interaction Network of Heroin Use Disorder |
title | Construction and Analysis of Protein-Protein Interaction Network of Heroin Use Disorder |
title_full | Construction and Analysis of Protein-Protein Interaction Network of Heroin Use Disorder |
title_fullStr | Construction and Analysis of Protein-Protein Interaction Network of Heroin Use Disorder |
title_full_unstemmed | Construction and Analysis of Protein-Protein Interaction Network of Heroin Use Disorder |
title_short | Construction and Analysis of Protein-Protein Interaction Network of Heroin Use Disorder |
title_sort | construction and analysis of protein-protein interaction network of heroin use disorder |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428805/ https://www.ncbi.nlm.nih.gov/pubmed/30899073 http://dx.doi.org/10.1038/s41598-019-41552-z |
work_keys_str_mv | AT chenshawji constructionandanalysisofproteinproteininteractionnetworkofheroinusedisorder AT liaodinglieh constructionandanalysisofproteinproteininteractionnetworkofheroinusedisorder AT chenchiahsiang constructionandanalysisofproteinproteininteractionnetworkofheroinusedisorder AT wangtseyi constructionandanalysisofproteinproteininteractionnetworkofheroinusedisorder AT chenkuangchi constructionandanalysisofproteinproteininteractionnetworkofheroinusedisorder |