Cargando…

Demonstration of End-to-End Automation of DNA Data Storage

Synthetic DNA has emerged as a novel substrate to encode computer data with the potential to be orders of magnitude denser than contemporary cutting edge techniques. However, even with the help of automated synthesis and sequencing devices, many intermediate steps still require expert laboratory tec...

Descripción completa

Detalles Bibliográficos
Autores principales: Takahashi, Christopher N., Nguyen, Bichlien H., Strauss, Karin, Ceze, Luis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428863/
https://www.ncbi.nlm.nih.gov/pubmed/30899031
http://dx.doi.org/10.1038/s41598-019-41228-8
_version_ 1783405471595495424
author Takahashi, Christopher N.
Nguyen, Bichlien H.
Strauss, Karin
Ceze, Luis
author_facet Takahashi, Christopher N.
Nguyen, Bichlien H.
Strauss, Karin
Ceze, Luis
author_sort Takahashi, Christopher N.
collection PubMed
description Synthetic DNA has emerged as a novel substrate to encode computer data with the potential to be orders of magnitude denser than contemporary cutting edge techniques. However, even with the help of automated synthesis and sequencing devices, many intermediate steps still require expert laboratory technicians to execute. We have developed an automated end-to-end DNA data storage device to explore the challenges of automation within the constraints of this unique application. Our device encodes data into a DNA sequence, which is then written to a DNA oligonucleotide using a custom DNA synthesizer, pooled for liquid storage, and read using a nanopore sequencer and a novel, minimal preparation protocol. We demonstrate an automated 5-byte write, store, and read cycle with a modular design enabling expansion as new technology becomes available.
format Online
Article
Text
id pubmed-6428863
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-64288632019-03-28 Demonstration of End-to-End Automation of DNA Data Storage Takahashi, Christopher N. Nguyen, Bichlien H. Strauss, Karin Ceze, Luis Sci Rep Article Synthetic DNA has emerged as a novel substrate to encode computer data with the potential to be orders of magnitude denser than contemporary cutting edge techniques. However, even with the help of automated synthesis and sequencing devices, many intermediate steps still require expert laboratory technicians to execute. We have developed an automated end-to-end DNA data storage device to explore the challenges of automation within the constraints of this unique application. Our device encodes data into a DNA sequence, which is then written to a DNA oligonucleotide using a custom DNA synthesizer, pooled for liquid storage, and read using a nanopore sequencer and a novel, minimal preparation protocol. We demonstrate an automated 5-byte write, store, and read cycle with a modular design enabling expansion as new technology becomes available. Nature Publishing Group UK 2019-03-21 /pmc/articles/PMC6428863/ /pubmed/30899031 http://dx.doi.org/10.1038/s41598-019-41228-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Takahashi, Christopher N.
Nguyen, Bichlien H.
Strauss, Karin
Ceze, Luis
Demonstration of End-to-End Automation of DNA Data Storage
title Demonstration of End-to-End Automation of DNA Data Storage
title_full Demonstration of End-to-End Automation of DNA Data Storage
title_fullStr Demonstration of End-to-End Automation of DNA Data Storage
title_full_unstemmed Demonstration of End-to-End Automation of DNA Data Storage
title_short Demonstration of End-to-End Automation of DNA Data Storage
title_sort demonstration of end-to-end automation of dna data storage
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428863/
https://www.ncbi.nlm.nih.gov/pubmed/30899031
http://dx.doi.org/10.1038/s41598-019-41228-8
work_keys_str_mv AT takahashichristophern demonstrationofendtoendautomationofdnadatastorage
AT nguyenbichlienh demonstrationofendtoendautomationofdnadatastorage
AT strausskarin demonstrationofendtoendautomationofdnadatastorage
AT cezeluis demonstrationofendtoendautomationofdnadatastorage