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Structure–Activity Prediction of ACE Inhibitory/Bitter Dipeptides—A Chemometric Approach Based on Stepwise Regression

Forward and backward stepwise regression (FR and BR, respectively) was applied for the structure–bioactivity prediction of angiotensin converting enzyme (ACE)-inhibitory/bitter-tasting dipeptides. The datasets used in this study consisted of 28 sequences and numerical variables reflecting dipeptides...

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Autores principales: Hrynkiewicz, Monika, Iwaniak, Anna, Bucholska, Justyna, Minkiewicz, Piotr, Darewicz, Małgorzata
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429184/
https://www.ncbi.nlm.nih.gov/pubmed/30857128
http://dx.doi.org/10.3390/molecules24050950
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author Hrynkiewicz, Monika
Iwaniak, Anna
Bucholska, Justyna
Minkiewicz, Piotr
Darewicz, Małgorzata
author_facet Hrynkiewicz, Monika
Iwaniak, Anna
Bucholska, Justyna
Minkiewicz, Piotr
Darewicz, Małgorzata
author_sort Hrynkiewicz, Monika
collection PubMed
description Forward and backward stepwise regression (FR and BR, respectively) was applied for the structure–bioactivity prediction of angiotensin converting enzyme (ACE)-inhibitory/bitter-tasting dipeptides. The datasets used in this study consisted of 28 sequences and numerical variables reflecting dipeptides’ physicochemical nature. The data were acquired from the BIOPEP-UWM, Biological Magnetic Resonance Databank, ProtScale, and AAindex databases. The calculations were computed using STATISTICA(®)13.1. FR/BR models differed in R(2) (0.91/0.76, respectively). The impact of C-(at)C(−) and N-Molw(+) on the dual function of dipeptides was observed. Positive (+) and negative (−) correlations with log IC(50) are presented in parens. Moreover, C-Bur(+), N-(at)H(+), and N-Pol(−) were also found to be important in the FR model. The additional statistical significance of N-bul(−), N-Bur(−), and N-Hdr(+) was reported in the BR model. These attributes reflected the composition of the dipeptides. We report that the “ideal” bitter ACE inhibitor should be composed of P, Y, F (C-end) and G, V, I, L (N-end). Functions: log R(caf.) = f (observed log IC(50)) and log R(caf.) = f (predicted log IC(50)) revealed no direct relationships between ACE inhibition and the bitterness of the dipeptides. It probably resulted from some structural discrepancies between the ACE inhibitory/bitter peptides and/or the measure of activity describing one of the two bioactivities. Our protocol can be applicable for the structure–bioactivity prediction of other bioactivities peptides.
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spelling pubmed-64291842019-04-15 Structure–Activity Prediction of ACE Inhibitory/Bitter Dipeptides—A Chemometric Approach Based on Stepwise Regression Hrynkiewicz, Monika Iwaniak, Anna Bucholska, Justyna Minkiewicz, Piotr Darewicz, Małgorzata Molecules Article Forward and backward stepwise regression (FR and BR, respectively) was applied for the structure–bioactivity prediction of angiotensin converting enzyme (ACE)-inhibitory/bitter-tasting dipeptides. The datasets used in this study consisted of 28 sequences and numerical variables reflecting dipeptides’ physicochemical nature. The data were acquired from the BIOPEP-UWM, Biological Magnetic Resonance Databank, ProtScale, and AAindex databases. The calculations were computed using STATISTICA(®)13.1. FR/BR models differed in R(2) (0.91/0.76, respectively). The impact of C-(at)C(−) and N-Molw(+) on the dual function of dipeptides was observed. Positive (+) and negative (−) correlations with log IC(50) are presented in parens. Moreover, C-Bur(+), N-(at)H(+), and N-Pol(−) were also found to be important in the FR model. The additional statistical significance of N-bul(−), N-Bur(−), and N-Hdr(+) was reported in the BR model. These attributes reflected the composition of the dipeptides. We report that the “ideal” bitter ACE inhibitor should be composed of P, Y, F (C-end) and G, V, I, L (N-end). Functions: log R(caf.) = f (observed log IC(50)) and log R(caf.) = f (predicted log IC(50)) revealed no direct relationships between ACE inhibition and the bitterness of the dipeptides. It probably resulted from some structural discrepancies between the ACE inhibitory/bitter peptides and/or the measure of activity describing one of the two bioactivities. Our protocol can be applicable for the structure–bioactivity prediction of other bioactivities peptides. MDPI 2019-03-08 /pmc/articles/PMC6429184/ /pubmed/30857128 http://dx.doi.org/10.3390/molecules24050950 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Hrynkiewicz, Monika
Iwaniak, Anna
Bucholska, Justyna
Minkiewicz, Piotr
Darewicz, Małgorzata
Structure–Activity Prediction of ACE Inhibitory/Bitter Dipeptides—A Chemometric Approach Based on Stepwise Regression
title Structure–Activity Prediction of ACE Inhibitory/Bitter Dipeptides—A Chemometric Approach Based on Stepwise Regression
title_full Structure–Activity Prediction of ACE Inhibitory/Bitter Dipeptides—A Chemometric Approach Based on Stepwise Regression
title_fullStr Structure–Activity Prediction of ACE Inhibitory/Bitter Dipeptides—A Chemometric Approach Based on Stepwise Regression
title_full_unstemmed Structure–Activity Prediction of ACE Inhibitory/Bitter Dipeptides—A Chemometric Approach Based on Stepwise Regression
title_short Structure–Activity Prediction of ACE Inhibitory/Bitter Dipeptides—A Chemometric Approach Based on Stepwise Regression
title_sort structure–activity prediction of ace inhibitory/bitter dipeptides—a chemometric approach based on stepwise regression
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429184/
https://www.ncbi.nlm.nih.gov/pubmed/30857128
http://dx.doi.org/10.3390/molecules24050950
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