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A Prediction Model for Preoperative Risk Assessment in Endometrial Cancer Utilizing Clinical and Molecular Variables

The utility of comprehensive surgical staging in patients with low risk disease has been questioned. Thus, a reliable means of determining risk would be quite useful. The aim of our study was to create the best performing prediction model to classify endometrioid endometrial cancer (EEC) patients in...

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Autores principales: Salinas, Erin A., Miller, Marina D., Newtson, Andreea M., Sharma, Deepti, McDonald, Megan E., Keeney, Matthew E., Smith, Brian J., Bender, David P., Goodheart, Michael J., Thiel, Kristina W., Devor, Eric J., Leslie, Kimberly K., Gonzalez Bosquet, Jesus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429416/
https://www.ncbi.nlm.nih.gov/pubmed/30857319
http://dx.doi.org/10.3390/ijms20051205
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author Salinas, Erin A.
Miller, Marina D.
Newtson, Andreea M.
Sharma, Deepti
McDonald, Megan E.
Keeney, Matthew E.
Smith, Brian J.
Bender, David P.
Goodheart, Michael J.
Thiel, Kristina W.
Devor, Eric J.
Leslie, Kimberly K.
Gonzalez Bosquet, Jesus
author_facet Salinas, Erin A.
Miller, Marina D.
Newtson, Andreea M.
Sharma, Deepti
McDonald, Megan E.
Keeney, Matthew E.
Smith, Brian J.
Bender, David P.
Goodheart, Michael J.
Thiel, Kristina W.
Devor, Eric J.
Leslie, Kimberly K.
Gonzalez Bosquet, Jesus
author_sort Salinas, Erin A.
collection PubMed
description The utility of comprehensive surgical staging in patients with low risk disease has been questioned. Thus, a reliable means of determining risk would be quite useful. The aim of our study was to create the best performing prediction model to classify endometrioid endometrial cancer (EEC) patients into low or high risk using a combination of molecular and clinical-pathological variables. We then validated these models with publicly available datasets. Analyses between low and high risk EEC were performed using clinical and pathological data, gene and miRNA expression data, gene copy number variation and somatic mutation data. Variables were selected to be included in the prediction model of risk using cross-validation analysis; prediction models were then constructed using these variables. Model performance was assessed by area under the curve (AUC). Prediction models were validated using appropriate datasets in The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. A prediction model with only clinical variables performed at 88%. Integrating clinical and molecular data improved prediction performance up to 97%. The best prediction models included clinical, miRNA expression and/or somatic mutation data, and stratified pre-operative risk in EEC patients. Integrating molecular and clinical data improved the performance of prediction models to over 95%, resulting in potentially useful clinical tests.
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spelling pubmed-64294162019-04-10 A Prediction Model for Preoperative Risk Assessment in Endometrial Cancer Utilizing Clinical and Molecular Variables Salinas, Erin A. Miller, Marina D. Newtson, Andreea M. Sharma, Deepti McDonald, Megan E. Keeney, Matthew E. Smith, Brian J. Bender, David P. Goodheart, Michael J. Thiel, Kristina W. Devor, Eric J. Leslie, Kimberly K. Gonzalez Bosquet, Jesus Int J Mol Sci Article The utility of comprehensive surgical staging in patients with low risk disease has been questioned. Thus, a reliable means of determining risk would be quite useful. The aim of our study was to create the best performing prediction model to classify endometrioid endometrial cancer (EEC) patients into low or high risk using a combination of molecular and clinical-pathological variables. We then validated these models with publicly available datasets. Analyses between low and high risk EEC were performed using clinical and pathological data, gene and miRNA expression data, gene copy number variation and somatic mutation data. Variables were selected to be included in the prediction model of risk using cross-validation analysis; prediction models were then constructed using these variables. Model performance was assessed by area under the curve (AUC). Prediction models were validated using appropriate datasets in The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. A prediction model with only clinical variables performed at 88%. Integrating clinical and molecular data improved prediction performance up to 97%. The best prediction models included clinical, miRNA expression and/or somatic mutation data, and stratified pre-operative risk in EEC patients. Integrating molecular and clinical data improved the performance of prediction models to over 95%, resulting in potentially useful clinical tests. MDPI 2019-03-09 /pmc/articles/PMC6429416/ /pubmed/30857319 http://dx.doi.org/10.3390/ijms20051205 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Salinas, Erin A.
Miller, Marina D.
Newtson, Andreea M.
Sharma, Deepti
McDonald, Megan E.
Keeney, Matthew E.
Smith, Brian J.
Bender, David P.
Goodheart, Michael J.
Thiel, Kristina W.
Devor, Eric J.
Leslie, Kimberly K.
Gonzalez Bosquet, Jesus
A Prediction Model for Preoperative Risk Assessment in Endometrial Cancer Utilizing Clinical and Molecular Variables
title A Prediction Model for Preoperative Risk Assessment in Endometrial Cancer Utilizing Clinical and Molecular Variables
title_full A Prediction Model for Preoperative Risk Assessment in Endometrial Cancer Utilizing Clinical and Molecular Variables
title_fullStr A Prediction Model for Preoperative Risk Assessment in Endometrial Cancer Utilizing Clinical and Molecular Variables
title_full_unstemmed A Prediction Model for Preoperative Risk Assessment in Endometrial Cancer Utilizing Clinical and Molecular Variables
title_short A Prediction Model for Preoperative Risk Assessment in Endometrial Cancer Utilizing Clinical and Molecular Variables
title_sort prediction model for preoperative risk assessment in endometrial cancer utilizing clinical and molecular variables
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429416/
https://www.ncbi.nlm.nih.gov/pubmed/30857319
http://dx.doi.org/10.3390/ijms20051205
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