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Electronic structure at coarse-grained resolutions from supervised machine learning

Computational studies aimed at understanding conformationally dependent electronic structure in soft materials require a combination of classical and quantum-mechanical simulations, for which the sampling of conformational space can be particularly demanding. Coarse-grained (CG) models provide a mea...

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Autores principales: Jackson, Nicholas E., Bowen, Alec S., Antony, Lucas W., Webb, Michael A., Vishwanath, Venkatram, de Pablo, Juan J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6430626/
https://www.ncbi.nlm.nih.gov/pubmed/30915396
http://dx.doi.org/10.1126/sciadv.aav1190
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author Jackson, Nicholas E.
Bowen, Alec S.
Antony, Lucas W.
Webb, Michael A.
Vishwanath, Venkatram
de Pablo, Juan J.
author_facet Jackson, Nicholas E.
Bowen, Alec S.
Antony, Lucas W.
Webb, Michael A.
Vishwanath, Venkatram
de Pablo, Juan J.
author_sort Jackson, Nicholas E.
collection PubMed
description Computational studies aimed at understanding conformationally dependent electronic structure in soft materials require a combination of classical and quantum-mechanical simulations, for which the sampling of conformational space can be particularly demanding. Coarse-grained (CG) models provide a means of accessing relevant time scales, but CG configurations must be back-mapped into atomistic representations to perform quantum-chemical calculations, which is computationally intensive and inconsistent with the spatial resolution of the CG models. A machine learning approach, denoted as artificial neural network electronic coarse graining (ANN-ECG), is presented here in which the conformationally dependent electronic structure of a molecule is mapped directly to CG pseudo-atom configurations. By averaging over decimated degrees of freedom, ANN-ECG accelerates simulations by eliminating backmapping and repeated quantum-chemical calculations. The approach is accurate, consistent with the CG spatial resolution, and can be used to identify computationally optimal CG resolutions.
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spelling pubmed-64306262019-03-26 Electronic structure at coarse-grained resolutions from supervised machine learning Jackson, Nicholas E. Bowen, Alec S. Antony, Lucas W. Webb, Michael A. Vishwanath, Venkatram de Pablo, Juan J. Sci Adv Research Articles Computational studies aimed at understanding conformationally dependent electronic structure in soft materials require a combination of classical and quantum-mechanical simulations, for which the sampling of conformational space can be particularly demanding. Coarse-grained (CG) models provide a means of accessing relevant time scales, but CG configurations must be back-mapped into atomistic representations to perform quantum-chemical calculations, which is computationally intensive and inconsistent with the spatial resolution of the CG models. A machine learning approach, denoted as artificial neural network electronic coarse graining (ANN-ECG), is presented here in which the conformationally dependent electronic structure of a molecule is mapped directly to CG pseudo-atom configurations. By averaging over decimated degrees of freedom, ANN-ECG accelerates simulations by eliminating backmapping and repeated quantum-chemical calculations. The approach is accurate, consistent with the CG spatial resolution, and can be used to identify computationally optimal CG resolutions. American Association for the Advancement of Science 2019-03-22 /pmc/articles/PMC6430626/ /pubmed/30915396 http://dx.doi.org/10.1126/sciadv.aav1190 Text en Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). http://creativecommons.org/licenses/by-nc/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (http://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Research Articles
Jackson, Nicholas E.
Bowen, Alec S.
Antony, Lucas W.
Webb, Michael A.
Vishwanath, Venkatram
de Pablo, Juan J.
Electronic structure at coarse-grained resolutions from supervised machine learning
title Electronic structure at coarse-grained resolutions from supervised machine learning
title_full Electronic structure at coarse-grained resolutions from supervised machine learning
title_fullStr Electronic structure at coarse-grained resolutions from supervised machine learning
title_full_unstemmed Electronic structure at coarse-grained resolutions from supervised machine learning
title_short Electronic structure at coarse-grained resolutions from supervised machine learning
title_sort electronic structure at coarse-grained resolutions from supervised machine learning
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6430626/
https://www.ncbi.nlm.nih.gov/pubmed/30915396
http://dx.doi.org/10.1126/sciadv.aav1190
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