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Measuring the importance of vertices in the weighted human disease network
Many human genetic disorders and diseases are known to be related to each other through frequently observed co-occurrences. Studying the correlations among multiple diseases provides an important avenue to better understand the common genetic background of diseases and to help develop new drugs that...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6430629/ https://www.ncbi.nlm.nih.gov/pubmed/30901770 http://dx.doi.org/10.1371/journal.pone.0205936 |
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author | Almasi, Seyed Mehrzad Hu, Ting |
author_facet | Almasi, Seyed Mehrzad Hu, Ting |
author_sort | Almasi, Seyed Mehrzad |
collection | PubMed |
description | Many human genetic disorders and diseases are known to be related to each other through frequently observed co-occurrences. Studying the correlations among multiple diseases provides an important avenue to better understand the common genetic background of diseases and to help develop new drugs that can treat multiple diseases. Meanwhile, network science has seen increasing applications on modeling complex biological systems, and can be a powerful tool to elucidate the correlations of multiple human diseases. In this article, known disease-gene associations were represented using a weighted bipartite network. We extracted a weighted human diseases network from such a bipartite network to show the correlations of diseases. Subsequently, we proposed a new centrality measurement for the weighted human disease network (WHDN) in order to quantify the importance of diseases. Using our centrality measurement to quantify the importance of vertices in WHDN, we were able to find a set of most central diseases. By investigating the 30 top diseases and their most correlated neighbors in the network, we identified disease linkages including known disease pairs and novel findings. Our research helps better understand the common genetic origin of human diseases and suggests top diseases that likely induce other related diseases. |
format | Online Article Text |
id | pubmed-6430629 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-64306292019-04-01 Measuring the importance of vertices in the weighted human disease network Almasi, Seyed Mehrzad Hu, Ting PLoS One Research Article Many human genetic disorders and diseases are known to be related to each other through frequently observed co-occurrences. Studying the correlations among multiple diseases provides an important avenue to better understand the common genetic background of diseases and to help develop new drugs that can treat multiple diseases. Meanwhile, network science has seen increasing applications on modeling complex biological systems, and can be a powerful tool to elucidate the correlations of multiple human diseases. In this article, known disease-gene associations were represented using a weighted bipartite network. We extracted a weighted human diseases network from such a bipartite network to show the correlations of diseases. Subsequently, we proposed a new centrality measurement for the weighted human disease network (WHDN) in order to quantify the importance of diseases. Using our centrality measurement to quantify the importance of vertices in WHDN, we were able to find a set of most central diseases. By investigating the 30 top diseases and their most correlated neighbors in the network, we identified disease linkages including known disease pairs and novel findings. Our research helps better understand the common genetic origin of human diseases and suggests top diseases that likely induce other related diseases. Public Library of Science 2019-03-22 /pmc/articles/PMC6430629/ /pubmed/30901770 http://dx.doi.org/10.1371/journal.pone.0205936 Text en © 2019 Almasi, Hu http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Almasi, Seyed Mehrzad Hu, Ting Measuring the importance of vertices in the weighted human disease network |
title | Measuring the importance of vertices in the weighted human disease network |
title_full | Measuring the importance of vertices in the weighted human disease network |
title_fullStr | Measuring the importance of vertices in the weighted human disease network |
title_full_unstemmed | Measuring the importance of vertices in the weighted human disease network |
title_short | Measuring the importance of vertices in the weighted human disease network |
title_sort | measuring the importance of vertices in the weighted human disease network |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6430629/ https://www.ncbi.nlm.nih.gov/pubmed/30901770 http://dx.doi.org/10.1371/journal.pone.0205936 |
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