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Polyelectrolyte Threading through a Nanopore
Threading charged polymers through a nanopore, driven by electric fields E, is investigated by means of Langevin dynamics simulations. The mean translocation time [Formula: see text] is shown to follow a scaling law [Formula: see text] , and the exponent α increases monotonically from [Formula: see...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6432567/ https://www.ncbi.nlm.nih.gov/pubmed/30979169 http://dx.doi.org/10.3390/polym8030073 |
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author | Hsiao, Pai-Yi |
author_facet | Hsiao, Pai-Yi |
author_sort | Hsiao, Pai-Yi |
collection | PubMed |
description | Threading charged polymers through a nanopore, driven by electric fields E, is investigated by means of Langevin dynamics simulations. The mean translocation time [Formula: see text] is shown to follow a scaling law [Formula: see text] , and the exponent α increases monotonically from [Formula: see text] to [Formula: see text] with E. The result is double-checked by the calculation of mean square displacement of translocation coordinate, which asserts a scaling behavior [Formula: see text] (for t near τ) with β complying with the relation [Formula: see text]. At a fixed chain length N, [Formula: see text] displayed a reciprocal scaling behavior [Formula: see text] in the weak and also in the strong fields, connected by a transition [Formula: see text] in the intermediate fields. The variations of the radius of gyration of chain and the positions of chain end are monitored during a translocation process; far-from-equilibrium behaviors are observed when the driving field is strong. A strong field can strip off the condensed ions on the chain when it passes the pore. The total charges of condensed ions are hence decreased. The studies for the probability and density distributions reveal that the monomers in the trans-region are gathered near the wall and form a pancake-like density profile with a hump cloud over it in the strong fields, due to fast translocation. |
format | Online Article Text |
id | pubmed-6432567 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-64325672019-04-02 Polyelectrolyte Threading through a Nanopore Hsiao, Pai-Yi Polymers (Basel) Article Threading charged polymers through a nanopore, driven by electric fields E, is investigated by means of Langevin dynamics simulations. The mean translocation time [Formula: see text] is shown to follow a scaling law [Formula: see text] , and the exponent α increases monotonically from [Formula: see text] to [Formula: see text] with E. The result is double-checked by the calculation of mean square displacement of translocation coordinate, which asserts a scaling behavior [Formula: see text] (for t near τ) with β complying with the relation [Formula: see text]. At a fixed chain length N, [Formula: see text] displayed a reciprocal scaling behavior [Formula: see text] in the weak and also in the strong fields, connected by a transition [Formula: see text] in the intermediate fields. The variations of the radius of gyration of chain and the positions of chain end are monitored during a translocation process; far-from-equilibrium behaviors are observed when the driving field is strong. A strong field can strip off the condensed ions on the chain when it passes the pore. The total charges of condensed ions are hence decreased. The studies for the probability and density distributions reveal that the monomers in the trans-region are gathered near the wall and form a pancake-like density profile with a hump cloud over it in the strong fields, due to fast translocation. MDPI 2016-03-03 /pmc/articles/PMC6432567/ /pubmed/30979169 http://dx.doi.org/10.3390/polym8030073 Text en © 2016 by the author. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons by Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hsiao, Pai-Yi Polyelectrolyte Threading through a Nanopore |
title | Polyelectrolyte Threading through a Nanopore |
title_full | Polyelectrolyte Threading through a Nanopore |
title_fullStr | Polyelectrolyte Threading through a Nanopore |
title_full_unstemmed | Polyelectrolyte Threading through a Nanopore |
title_short | Polyelectrolyte Threading through a Nanopore |
title_sort | polyelectrolyte threading through a nanopore |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6432567/ https://www.ncbi.nlm.nih.gov/pubmed/30979169 http://dx.doi.org/10.3390/polym8030073 |
work_keys_str_mv | AT hsiaopaiyi polyelectrolytethreadingthroughananopore |