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Conformation and Rheological Properties of Calf-Thymus DNA in Solution

Studies of DNA molecule behavior in aqueous solutions performed through different approaches allow assessment of the solute-solvent interactions and examination of the strong influence of conformation on its physicochemical properties, in the presence of different ionic species and ionic concentrati...

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Autores principales: Bravo-Anaya, Lourdes Mónica, Rinaudo, Marguerite, Soltero Martínez, Félix Armando
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6432584/
https://www.ncbi.nlm.nih.gov/pubmed/30979142
http://dx.doi.org/10.3390/polym8020051
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author Bravo-Anaya, Lourdes Mónica
Rinaudo, Marguerite
Soltero Martínez, Félix Armando
author_facet Bravo-Anaya, Lourdes Mónica
Rinaudo, Marguerite
Soltero Martínez, Félix Armando
author_sort Bravo-Anaya, Lourdes Mónica
collection PubMed
description Studies of DNA molecule behavior in aqueous solutions performed through different approaches allow assessment of the solute-solvent interactions and examination of the strong influence of conformation on its physicochemical properties, in the presence of different ionic species and ionic concentrations. Firstly, the conformational behavior of calf-thymus DNA molecules in TE buffer solution is presented as a function of temperature. Secondly, their rheological behavior is discussed, as well as the evidence of the critical concentrations, i.e., the overlap and the entanglement concentrations (C* and C(e), respectively) from steady state flow and oscillatory dynamic shear experiments. The determination of the viscosity in the Newtonian plateau obtained from flow curves η ([Formula: see text]) allows estimation of the intrinsic viscosity and the specific viscosities at zero shear when C[η] < 40. At end, a generalized master curve is obtained from the variation of the specific viscosity as a function of the overlap parameter C[η]. The variation of the exponent s obtained from the power law η~ [Formula: see text] (−s) for both flow and dynamic results is discussed in terms of Graessley’s analysis. In the semi-dilute regime with entanglements, a dynamic master curve is obtained as a function of DNA concentration (C(DNA) > 2.0 mg/mL) and temperature (10 °C < T < 40 °C).
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spelling pubmed-64325842019-04-02 Conformation and Rheological Properties of Calf-Thymus DNA in Solution Bravo-Anaya, Lourdes Mónica Rinaudo, Marguerite Soltero Martínez, Félix Armando Polymers (Basel) Article Studies of DNA molecule behavior in aqueous solutions performed through different approaches allow assessment of the solute-solvent interactions and examination of the strong influence of conformation on its physicochemical properties, in the presence of different ionic species and ionic concentrations. Firstly, the conformational behavior of calf-thymus DNA molecules in TE buffer solution is presented as a function of temperature. Secondly, their rheological behavior is discussed, as well as the evidence of the critical concentrations, i.e., the overlap and the entanglement concentrations (C* and C(e), respectively) from steady state flow and oscillatory dynamic shear experiments. The determination of the viscosity in the Newtonian plateau obtained from flow curves η ([Formula: see text]) allows estimation of the intrinsic viscosity and the specific viscosities at zero shear when C[η] < 40. At end, a generalized master curve is obtained from the variation of the specific viscosity as a function of the overlap parameter C[η]. The variation of the exponent s obtained from the power law η~ [Formula: see text] (−s) for both flow and dynamic results is discussed in terms of Graessley’s analysis. In the semi-dilute regime with entanglements, a dynamic master curve is obtained as a function of DNA concentration (C(DNA) > 2.0 mg/mL) and temperature (10 °C < T < 40 °C). MDPI 2016-02-11 /pmc/articles/PMC6432584/ /pubmed/30979142 http://dx.doi.org/10.3390/polym8020051 Text en © 2016 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons by Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Bravo-Anaya, Lourdes Mónica
Rinaudo, Marguerite
Soltero Martínez, Félix Armando
Conformation and Rheological Properties of Calf-Thymus DNA in Solution
title Conformation and Rheological Properties of Calf-Thymus DNA in Solution
title_full Conformation and Rheological Properties of Calf-Thymus DNA in Solution
title_fullStr Conformation and Rheological Properties of Calf-Thymus DNA in Solution
title_full_unstemmed Conformation and Rheological Properties of Calf-Thymus DNA in Solution
title_short Conformation and Rheological Properties of Calf-Thymus DNA in Solution
title_sort conformation and rheological properties of calf-thymus dna in solution
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6432584/
https://www.ncbi.nlm.nih.gov/pubmed/30979142
http://dx.doi.org/10.3390/polym8020051
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