Cargando…
Conformation and Rheological Properties of Calf-Thymus DNA in Solution
Studies of DNA molecule behavior in aqueous solutions performed through different approaches allow assessment of the solute-solvent interactions and examination of the strong influence of conformation on its physicochemical properties, in the presence of different ionic species and ionic concentrati...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6432584/ https://www.ncbi.nlm.nih.gov/pubmed/30979142 http://dx.doi.org/10.3390/polym8020051 |
_version_ | 1783406169090424832 |
---|---|
author | Bravo-Anaya, Lourdes Mónica Rinaudo, Marguerite Soltero Martínez, Félix Armando |
author_facet | Bravo-Anaya, Lourdes Mónica Rinaudo, Marguerite Soltero Martínez, Félix Armando |
author_sort | Bravo-Anaya, Lourdes Mónica |
collection | PubMed |
description | Studies of DNA molecule behavior in aqueous solutions performed through different approaches allow assessment of the solute-solvent interactions and examination of the strong influence of conformation on its physicochemical properties, in the presence of different ionic species and ionic concentrations. Firstly, the conformational behavior of calf-thymus DNA molecules in TE buffer solution is presented as a function of temperature. Secondly, their rheological behavior is discussed, as well as the evidence of the critical concentrations, i.e., the overlap and the entanglement concentrations (C* and C(e), respectively) from steady state flow and oscillatory dynamic shear experiments. The determination of the viscosity in the Newtonian plateau obtained from flow curves η ([Formula: see text]) allows estimation of the intrinsic viscosity and the specific viscosities at zero shear when C[η] < 40. At end, a generalized master curve is obtained from the variation of the specific viscosity as a function of the overlap parameter C[η]. The variation of the exponent s obtained from the power law η~ [Formula: see text] (−s) for both flow and dynamic results is discussed in terms of Graessley’s analysis. In the semi-dilute regime with entanglements, a dynamic master curve is obtained as a function of DNA concentration (C(DNA) > 2.0 mg/mL) and temperature (10 °C < T < 40 °C). |
format | Online Article Text |
id | pubmed-6432584 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-64325842019-04-02 Conformation and Rheological Properties of Calf-Thymus DNA in Solution Bravo-Anaya, Lourdes Mónica Rinaudo, Marguerite Soltero Martínez, Félix Armando Polymers (Basel) Article Studies of DNA molecule behavior in aqueous solutions performed through different approaches allow assessment of the solute-solvent interactions and examination of the strong influence of conformation on its physicochemical properties, in the presence of different ionic species and ionic concentrations. Firstly, the conformational behavior of calf-thymus DNA molecules in TE buffer solution is presented as a function of temperature. Secondly, their rheological behavior is discussed, as well as the evidence of the critical concentrations, i.e., the overlap and the entanglement concentrations (C* and C(e), respectively) from steady state flow and oscillatory dynamic shear experiments. The determination of the viscosity in the Newtonian plateau obtained from flow curves η ([Formula: see text]) allows estimation of the intrinsic viscosity and the specific viscosities at zero shear when C[η] < 40. At end, a generalized master curve is obtained from the variation of the specific viscosity as a function of the overlap parameter C[η]. The variation of the exponent s obtained from the power law η~ [Formula: see text] (−s) for both flow and dynamic results is discussed in terms of Graessley’s analysis. In the semi-dilute regime with entanglements, a dynamic master curve is obtained as a function of DNA concentration (C(DNA) > 2.0 mg/mL) and temperature (10 °C < T < 40 °C). MDPI 2016-02-11 /pmc/articles/PMC6432584/ /pubmed/30979142 http://dx.doi.org/10.3390/polym8020051 Text en © 2016 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons by Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Bravo-Anaya, Lourdes Mónica Rinaudo, Marguerite Soltero Martínez, Félix Armando Conformation and Rheological Properties of Calf-Thymus DNA in Solution |
title | Conformation and Rheological Properties of Calf-Thymus DNA in Solution |
title_full | Conformation and Rheological Properties of Calf-Thymus DNA in Solution |
title_fullStr | Conformation and Rheological Properties of Calf-Thymus DNA in Solution |
title_full_unstemmed | Conformation and Rheological Properties of Calf-Thymus DNA in Solution |
title_short | Conformation and Rheological Properties of Calf-Thymus DNA in Solution |
title_sort | conformation and rheological properties of calf-thymus dna in solution |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6432584/ https://www.ncbi.nlm.nih.gov/pubmed/30979142 http://dx.doi.org/10.3390/polym8020051 |
work_keys_str_mv | AT bravoanayalourdesmonica conformationandrheologicalpropertiesofcalfthymusdnainsolution AT rinaudomarguerite conformationandrheologicalpropertiesofcalfthymusdnainsolution AT solteromartinezfelixarmando conformationandrheologicalpropertiesofcalfthymusdnainsolution |