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Shared and unique features of bacterial communities in native forest and vineyard phyllosphere
Phyllosphere bacteria have received little attention despite their important roles in shaping plant performance traits. In this study, we characterize the bacterial communities on leaves of native trees inhabiting sclerophyllous forests in central Chile, one of the world's biodiversity hotspots...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434556/ https://www.ncbi.nlm.nih.gov/pubmed/30962893 http://dx.doi.org/10.1002/ece3.4949 |
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author | Miura, Toshiko Sánchez, Roland Castañeda, Luis E. Godoy, Karina Barbosa, Olga |
author_facet | Miura, Toshiko Sánchez, Roland Castañeda, Luis E. Godoy, Karina Barbosa, Olga |
author_sort | Miura, Toshiko |
collection | PubMed |
description | Phyllosphere bacteria have received little attention despite their important roles in shaping plant performance traits. In this study, we characterize the bacterial communities on leaves of native trees inhabiting sclerophyllous forests in central Chile, one of the world's biodiversity hotspots. Additionally, we provide profiles of bacterial communities on grape leaves and berries of organic and conventional vineyards. Results of 16S rRNA gene amplicon sequence analysis showed that 45% of OTUs were shared across forest leaves, grape leaves, and grape berries. Conventional management had higher number of OTUs shared with forest leaves than organic management. In addition, grape leaves subjected to conventional management had higher alpha diversity than those with organic management, while no significant effect of agricultural management was observed in grape berries. Indicator analysis showed that Bdellovibrio, Beijerinckia, and Spirosoma were typical for forest leaves, whereas Enhydrobacter, Delftia, Proteiniclasticum, Arsenicicoccus, and Alkaliphilus were typical for the vineyard phyllosphere. Regarding agricultural managements, Beijerinckia, Sedimentibacter, Nesterenkonia, Gluconobacter, Conexibacter, and Anaeromyxobacter were typical for conventional grape leaves, whereas no genus‐level indicator was found for organic vineyard leaves. These results provide new insights of the diversity patterns of the phyllosphere microbiome in native and cultivated lands and suggest that both of these microbiomes are connected and integrated systems. |
format | Online Article Text |
id | pubmed-6434556 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-64345562019-04-08 Shared and unique features of bacterial communities in native forest and vineyard phyllosphere Miura, Toshiko Sánchez, Roland Castañeda, Luis E. Godoy, Karina Barbosa, Olga Ecol Evol Original Research Phyllosphere bacteria have received little attention despite their important roles in shaping plant performance traits. In this study, we characterize the bacterial communities on leaves of native trees inhabiting sclerophyllous forests in central Chile, one of the world's biodiversity hotspots. Additionally, we provide profiles of bacterial communities on grape leaves and berries of organic and conventional vineyards. Results of 16S rRNA gene amplicon sequence analysis showed that 45% of OTUs were shared across forest leaves, grape leaves, and grape berries. Conventional management had higher number of OTUs shared with forest leaves than organic management. In addition, grape leaves subjected to conventional management had higher alpha diversity than those with organic management, while no significant effect of agricultural management was observed in grape berries. Indicator analysis showed that Bdellovibrio, Beijerinckia, and Spirosoma were typical for forest leaves, whereas Enhydrobacter, Delftia, Proteiniclasticum, Arsenicicoccus, and Alkaliphilus were typical for the vineyard phyllosphere. Regarding agricultural managements, Beijerinckia, Sedimentibacter, Nesterenkonia, Gluconobacter, Conexibacter, and Anaeromyxobacter were typical for conventional grape leaves, whereas no genus‐level indicator was found for organic vineyard leaves. These results provide new insights of the diversity patterns of the phyllosphere microbiome in native and cultivated lands and suggest that both of these microbiomes are connected and integrated systems. John Wiley and Sons Inc. 2019-02-20 /pmc/articles/PMC6434556/ /pubmed/30962893 http://dx.doi.org/10.1002/ece3.4949 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Miura, Toshiko Sánchez, Roland Castañeda, Luis E. Godoy, Karina Barbosa, Olga Shared and unique features of bacterial communities in native forest and vineyard phyllosphere |
title | Shared and unique features of bacterial communities in native forest and vineyard phyllosphere |
title_full | Shared and unique features of bacterial communities in native forest and vineyard phyllosphere |
title_fullStr | Shared and unique features of bacterial communities in native forest and vineyard phyllosphere |
title_full_unstemmed | Shared and unique features of bacterial communities in native forest and vineyard phyllosphere |
title_short | Shared and unique features of bacterial communities in native forest and vineyard phyllosphere |
title_sort | shared and unique features of bacterial communities in native forest and vineyard phyllosphere |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434556/ https://www.ncbi.nlm.nih.gov/pubmed/30962893 http://dx.doi.org/10.1002/ece3.4949 |
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