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Draft genome of the river water buffalo
Water buffalo (Bubalus bubalis), a large‐sized member of the Bovidae family, is considered as an important livestock species throughout Southeast Asia. In order to better understand the molecular basis of buffalo improvement and breeding, we sequenced and assembled the genome (2n=50) of a river buff...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434576/ https://www.ncbi.nlm.nih.gov/pubmed/30962899 http://dx.doi.org/10.1002/ece3.4965 |
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author | Mintoo, Abdul Awal Zhang, Hailin Chen, Chunhai Moniruzzaman, Mohammad Deng, Tingxian Anam, Mahbub Emdadul Huque, Quazi Mohammad Guang, Xuanmin Wang, Ping Zhong, Zhen Han, Pengfei Khatun, Asma Awal, Tabith M. Gao, Qiang Liang, Xianwei |
author_facet | Mintoo, Abdul Awal Zhang, Hailin Chen, Chunhai Moniruzzaman, Mohammad Deng, Tingxian Anam, Mahbub Emdadul Huque, Quazi Mohammad Guang, Xuanmin Wang, Ping Zhong, Zhen Han, Pengfei Khatun, Asma Awal, Tabith M. Gao, Qiang Liang, Xianwei |
author_sort | Mintoo, Abdul Awal |
collection | PubMed |
description | Water buffalo (Bubalus bubalis), a large‐sized member of the Bovidae family, is considered as an important livestock species throughout Southeast Asia. In order to better understand the molecular basis of buffalo improvement and breeding, we sequenced and assembled the genome (2n=50) of a river buffalo species Bubalus bubalis from Bangladesh. Its genome size is 2.77 Gb, with a contig N50 of 25 kb and the scaffold N50 of 6.9 Mbp. Based on the assembled genome, we annotated 24,613 genes for future functional genomics studies. Phylogenetic tree analysis of cattle and water buffalo lineages showed that they diverged about 5.8–9.8 million years ago. Our findings provide an insight into the water buffalo genome which will contribute in further research on buffalo such as molecular breeding, understanding complex traits, conservation, and biodiversity. |
format | Online Article Text |
id | pubmed-6434576 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-64345762019-04-08 Draft genome of the river water buffalo Mintoo, Abdul Awal Zhang, Hailin Chen, Chunhai Moniruzzaman, Mohammad Deng, Tingxian Anam, Mahbub Emdadul Huque, Quazi Mohammad Guang, Xuanmin Wang, Ping Zhong, Zhen Han, Pengfei Khatun, Asma Awal, Tabith M. Gao, Qiang Liang, Xianwei Ecol Evol Original Research Water buffalo (Bubalus bubalis), a large‐sized member of the Bovidae family, is considered as an important livestock species throughout Southeast Asia. In order to better understand the molecular basis of buffalo improvement and breeding, we sequenced and assembled the genome (2n=50) of a river buffalo species Bubalus bubalis from Bangladesh. Its genome size is 2.77 Gb, with a contig N50 of 25 kb and the scaffold N50 of 6.9 Mbp. Based on the assembled genome, we annotated 24,613 genes for future functional genomics studies. Phylogenetic tree analysis of cattle and water buffalo lineages showed that they diverged about 5.8–9.8 million years ago. Our findings provide an insight into the water buffalo genome which will contribute in further research on buffalo such as molecular breeding, understanding complex traits, conservation, and biodiversity. John Wiley and Sons Inc. 2019-02-18 /pmc/articles/PMC6434576/ /pubmed/30962899 http://dx.doi.org/10.1002/ece3.4965 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Mintoo, Abdul Awal Zhang, Hailin Chen, Chunhai Moniruzzaman, Mohammad Deng, Tingxian Anam, Mahbub Emdadul Huque, Quazi Mohammad Guang, Xuanmin Wang, Ping Zhong, Zhen Han, Pengfei Khatun, Asma Awal, Tabith M. Gao, Qiang Liang, Xianwei Draft genome of the river water buffalo |
title | Draft genome of the river water buffalo |
title_full | Draft genome of the river water buffalo |
title_fullStr | Draft genome of the river water buffalo |
title_full_unstemmed | Draft genome of the river water buffalo |
title_short | Draft genome of the river water buffalo |
title_sort | draft genome of the river water buffalo |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434576/ https://www.ncbi.nlm.nih.gov/pubmed/30962899 http://dx.doi.org/10.1002/ece3.4965 |
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