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Draft genome of the river water buffalo

Water buffalo (Bubalus bubalis), a large‐sized member of the Bovidae family, is considered as an important livestock species throughout Southeast Asia. In order to better understand the molecular basis of buffalo improvement and breeding, we sequenced and assembled the genome (2n=50) of a river buff...

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Autores principales: Mintoo, Abdul Awal, Zhang, Hailin, Chen, Chunhai, Moniruzzaman, Mohammad, Deng, Tingxian, Anam, Mahbub, Emdadul Huque, Quazi Mohammad, Guang, Xuanmin, Wang, Ping, Zhong, Zhen, Han, Pengfei, Khatun, Asma, Awal, Tabith M., Gao, Qiang, Liang, Xianwei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434576/
https://www.ncbi.nlm.nih.gov/pubmed/30962899
http://dx.doi.org/10.1002/ece3.4965
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author Mintoo, Abdul Awal
Zhang, Hailin
Chen, Chunhai
Moniruzzaman, Mohammad
Deng, Tingxian
Anam, Mahbub
Emdadul Huque, Quazi Mohammad
Guang, Xuanmin
Wang, Ping
Zhong, Zhen
Han, Pengfei
Khatun, Asma
Awal, Tabith M.
Gao, Qiang
Liang, Xianwei
author_facet Mintoo, Abdul Awal
Zhang, Hailin
Chen, Chunhai
Moniruzzaman, Mohammad
Deng, Tingxian
Anam, Mahbub
Emdadul Huque, Quazi Mohammad
Guang, Xuanmin
Wang, Ping
Zhong, Zhen
Han, Pengfei
Khatun, Asma
Awal, Tabith M.
Gao, Qiang
Liang, Xianwei
author_sort Mintoo, Abdul Awal
collection PubMed
description Water buffalo (Bubalus bubalis), a large‐sized member of the Bovidae family, is considered as an important livestock species throughout Southeast Asia. In order to better understand the molecular basis of buffalo improvement and breeding, we sequenced and assembled the genome (2n=50) of a river buffalo species Bubalus bubalis from Bangladesh. Its genome size is 2.77 Gb, with a contig N50 of 25 kb and the scaffold N50 of 6.9 Mbp. Based on the assembled genome, we annotated 24,613 genes for future functional genomics studies. Phylogenetic tree analysis of cattle and water buffalo lineages showed that they diverged about 5.8–9.8 million years ago. Our findings provide an insight into the water buffalo genome which will contribute in further research on buffalo such as molecular breeding, understanding complex traits, conservation, and biodiversity.
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spelling pubmed-64345762019-04-08 Draft genome of the river water buffalo Mintoo, Abdul Awal Zhang, Hailin Chen, Chunhai Moniruzzaman, Mohammad Deng, Tingxian Anam, Mahbub Emdadul Huque, Quazi Mohammad Guang, Xuanmin Wang, Ping Zhong, Zhen Han, Pengfei Khatun, Asma Awal, Tabith M. Gao, Qiang Liang, Xianwei Ecol Evol Original Research Water buffalo (Bubalus bubalis), a large‐sized member of the Bovidae family, is considered as an important livestock species throughout Southeast Asia. In order to better understand the molecular basis of buffalo improvement and breeding, we sequenced and assembled the genome (2n=50) of a river buffalo species Bubalus bubalis from Bangladesh. Its genome size is 2.77 Gb, with a contig N50 of 25 kb and the scaffold N50 of 6.9 Mbp. Based on the assembled genome, we annotated 24,613 genes for future functional genomics studies. Phylogenetic tree analysis of cattle and water buffalo lineages showed that they diverged about 5.8–9.8 million years ago. Our findings provide an insight into the water buffalo genome which will contribute in further research on buffalo such as molecular breeding, understanding complex traits, conservation, and biodiversity. John Wiley and Sons Inc. 2019-02-18 /pmc/articles/PMC6434576/ /pubmed/30962899 http://dx.doi.org/10.1002/ece3.4965 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Mintoo, Abdul Awal
Zhang, Hailin
Chen, Chunhai
Moniruzzaman, Mohammad
Deng, Tingxian
Anam, Mahbub
Emdadul Huque, Quazi Mohammad
Guang, Xuanmin
Wang, Ping
Zhong, Zhen
Han, Pengfei
Khatun, Asma
Awal, Tabith M.
Gao, Qiang
Liang, Xianwei
Draft genome of the river water buffalo
title Draft genome of the river water buffalo
title_full Draft genome of the river water buffalo
title_fullStr Draft genome of the river water buffalo
title_full_unstemmed Draft genome of the river water buffalo
title_short Draft genome of the river water buffalo
title_sort draft genome of the river water buffalo
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434576/
https://www.ncbi.nlm.nih.gov/pubmed/30962899
http://dx.doi.org/10.1002/ece3.4965
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