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A comparison of techniques for classifying behavior from accelerometers for two species of seabird

The behavior of many wild animals remains a mystery, as it is difficult to quantify behavior of species that cannot be easily followed throughout their daily or seasonal movements. Accelerometers can solve some of these mysteries, as they collect activity data at a high temporal resolution (<1 s)...

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Autores principales: Patterson, Allison, Gilchrist, Hugh Grant, Chivers, Lorraine, Hatch, Scott, Elliott, Kyle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434605/
https://www.ncbi.nlm.nih.gov/pubmed/30962879
http://dx.doi.org/10.1002/ece3.4740
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author Patterson, Allison
Gilchrist, Hugh Grant
Chivers, Lorraine
Hatch, Scott
Elliott, Kyle
author_facet Patterson, Allison
Gilchrist, Hugh Grant
Chivers, Lorraine
Hatch, Scott
Elliott, Kyle
author_sort Patterson, Allison
collection PubMed
description The behavior of many wild animals remains a mystery, as it is difficult to quantify behavior of species that cannot be easily followed throughout their daily or seasonal movements. Accelerometers can solve some of these mysteries, as they collect activity data at a high temporal resolution (<1 s), can be relatively small (<1 g) so they minimally disrupt behavior, and are increasingly capable of recording data for long periods. Nonetheless, there is a need for increased validation of methods to classify animal behavior from accelerometers to promote widespread adoption of this technology in ecology. We assessed the accuracy of six different behavioral assignment methods for two species of seabird, thick‐billed murres (Uria lomvia) and black‐legged kittiwakes (Rissa tridactyla). We identified three behaviors using tri‐axial accelerometers: standing, swimming, and flying, after classifying diving using a pressure sensor for murres. We evaluated six classification methods relative to independent classifications from concurrent GPS tracking data. We used four variables for classification: depth, wing beat frequency, pitch, and dynamic acceleration. Average accuracy for all methods was >98% for murres, and 89% and 93% for kittiwakes during incubation and chick rearing, respectively. Variable selection showed that classification accuracy did not improve with more than two (kittiwakes) or three (murres) variables. We conclude that simple methods of behavioral classification can be as accurate for classifying basic behaviors as more complex approaches, and that identifying suitable accelerometer metrics is more important than using a particular classification method when the objective is to develop a daily activity or energy budget. Highly accurate daily activity budgets can be generated from accelerometer data using multiple methods and a small number of accelerometer metrics; therefore, identifying a suitable behavioral classification method should not be a barrier to using accelerometers in studies of seabird behavior and ecology.
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spelling pubmed-64346052019-04-08 A comparison of techniques for classifying behavior from accelerometers for two species of seabird Patterson, Allison Gilchrist, Hugh Grant Chivers, Lorraine Hatch, Scott Elliott, Kyle Ecol Evol Original Research The behavior of many wild animals remains a mystery, as it is difficult to quantify behavior of species that cannot be easily followed throughout their daily or seasonal movements. Accelerometers can solve some of these mysteries, as they collect activity data at a high temporal resolution (<1 s), can be relatively small (<1 g) so they minimally disrupt behavior, and are increasingly capable of recording data for long periods. Nonetheless, there is a need for increased validation of methods to classify animal behavior from accelerometers to promote widespread adoption of this technology in ecology. We assessed the accuracy of six different behavioral assignment methods for two species of seabird, thick‐billed murres (Uria lomvia) and black‐legged kittiwakes (Rissa tridactyla). We identified three behaviors using tri‐axial accelerometers: standing, swimming, and flying, after classifying diving using a pressure sensor for murres. We evaluated six classification methods relative to independent classifications from concurrent GPS tracking data. We used four variables for classification: depth, wing beat frequency, pitch, and dynamic acceleration. Average accuracy for all methods was >98% for murres, and 89% and 93% for kittiwakes during incubation and chick rearing, respectively. Variable selection showed that classification accuracy did not improve with more than two (kittiwakes) or three (murres) variables. We conclude that simple methods of behavioral classification can be as accurate for classifying basic behaviors as more complex approaches, and that identifying suitable accelerometer metrics is more important than using a particular classification method when the objective is to develop a daily activity or energy budget. Highly accurate daily activity budgets can be generated from accelerometer data using multiple methods and a small number of accelerometer metrics; therefore, identifying a suitable behavioral classification method should not be a barrier to using accelerometers in studies of seabird behavior and ecology. John Wiley and Sons Inc. 2019-02-21 /pmc/articles/PMC6434605/ /pubmed/30962879 http://dx.doi.org/10.1002/ece3.4740 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Patterson, Allison
Gilchrist, Hugh Grant
Chivers, Lorraine
Hatch, Scott
Elliott, Kyle
A comparison of techniques for classifying behavior from accelerometers for two species of seabird
title A comparison of techniques for classifying behavior from accelerometers for two species of seabird
title_full A comparison of techniques for classifying behavior from accelerometers for two species of seabird
title_fullStr A comparison of techniques for classifying behavior from accelerometers for two species of seabird
title_full_unstemmed A comparison of techniques for classifying behavior from accelerometers for two species of seabird
title_short A comparison of techniques for classifying behavior from accelerometers for two species of seabird
title_sort comparison of techniques for classifying behavior from accelerometers for two species of seabird
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434605/
https://www.ncbi.nlm.nih.gov/pubmed/30962879
http://dx.doi.org/10.1002/ece3.4740
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