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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Nature Publishing Group US
2017
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6436528/ https://www.ncbi.nlm.nih.gov/pubmed/28787424 http://dx.doi.org/10.1038/nbt.3893 |
| _version_ | 1783406825230565376 |
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| author | Bowers, Robert M Kyrpides, Nikos C Stepanauskas, Ramunas Harmon-Smith, Miranda Doud, Devin Reddy, T B K Schulz, Frederik Jarett, Jessica Rivers, Adam R Eloe-Fadrosh, Emiley A Tringe, Susannah G Ivanova, Natalia N Copeland, Alex Clum, Alicia Becraft, Eric D Malmstrom, Rex R Birren, Bruce Podar, Mircea Bork, Peer Weinstock, George M Garrity, George M Dodsworth, Jeremy A Yooseph, Shibu Sutton, Granger Glöckner, Frank O Gilbert, Jack A Nelson, William C Hallam, Steven J Jungbluth, Sean P Ettema, Thijs J G Tighe, Scott Konstantinidis, Konstantinos T Liu, Wen-Tso Baker, Brett J Rattei, Thomas Eisen, Jonathan A Hedlund, Brian McMahon, Katherine D Fierer, Noah Knight, Rob Finn, Rob Cochrane, Guy Karsch-Mizrachi, Ilene Tyson, Gene W Rinke, Christian Lapidus, Alla Meyer, Folker Yilmaz, Pelin Parks, Donovan H Murat Eren, A Schriml, Lynn Banfield, Jillian F Hugenholtz, Philip Woyke, Tanja |
| author_facet | Bowers, Robert M Kyrpides, Nikos C Stepanauskas, Ramunas Harmon-Smith, Miranda Doud, Devin Reddy, T B K Schulz, Frederik Jarett, Jessica Rivers, Adam R Eloe-Fadrosh, Emiley A Tringe, Susannah G Ivanova, Natalia N Copeland, Alex Clum, Alicia Becraft, Eric D Malmstrom, Rex R Birren, Bruce Podar, Mircea Bork, Peer Weinstock, George M Garrity, George M Dodsworth, Jeremy A Yooseph, Shibu Sutton, Granger Glöckner, Frank O Gilbert, Jack A Nelson, William C Hallam, Steven J Jungbluth, Sean P Ettema, Thijs J G Tighe, Scott Konstantinidis, Konstantinos T Liu, Wen-Tso Baker, Brett J Rattei, Thomas Eisen, Jonathan A Hedlund, Brian McMahon, Katherine D Fierer, Noah Knight, Rob Finn, Rob Cochrane, Guy Karsch-Mizrachi, Ilene Tyson, Gene W Rinke, Christian Lapidus, Alla Meyer, Folker Yilmaz, Pelin Parks, Donovan H Murat Eren, A Schriml, Lynn Banfield, Jillian F Hugenholtz, Philip Woyke, Tanja |
| author_sort | Bowers, Robert M |
| collection | PubMed |
| description | We present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome-Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity. SUPPLEMENTARY INFORMATION: The online version of this article (doi:10.1038/nbt.3893) contains supplementary material, which is available to authorized users. |
| format | Online Article Text |
| id | pubmed-6436528 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2017 |
| publisher | Nature Publishing Group US |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-64365282019-03-27 Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea Bowers, Robert M Kyrpides, Nikos C Stepanauskas, Ramunas Harmon-Smith, Miranda Doud, Devin Reddy, T B K Schulz, Frederik Jarett, Jessica Rivers, Adam R Eloe-Fadrosh, Emiley A Tringe, Susannah G Ivanova, Natalia N Copeland, Alex Clum, Alicia Becraft, Eric D Malmstrom, Rex R Birren, Bruce Podar, Mircea Bork, Peer Weinstock, George M Garrity, George M Dodsworth, Jeremy A Yooseph, Shibu Sutton, Granger Glöckner, Frank O Gilbert, Jack A Nelson, William C Hallam, Steven J Jungbluth, Sean P Ettema, Thijs J G Tighe, Scott Konstantinidis, Konstantinos T Liu, Wen-Tso Baker, Brett J Rattei, Thomas Eisen, Jonathan A Hedlund, Brian McMahon, Katherine D Fierer, Noah Knight, Rob Finn, Rob Cochrane, Guy Karsch-Mizrachi, Ilene Tyson, Gene W Rinke, Christian Lapidus, Alla Meyer, Folker Yilmaz, Pelin Parks, Donovan H Murat Eren, A Schriml, Lynn Banfield, Jillian F Hugenholtz, Philip Woyke, Tanja Nat Biotechnol Article We present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome-Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity. SUPPLEMENTARY INFORMATION: The online version of this article (doi:10.1038/nbt.3893) contains supplementary material, which is available to authorized users. Nature Publishing Group US 2017-08-01 2017 /pmc/articles/PMC6436528/ /pubmed/28787424 http://dx.doi.org/10.1038/nbt.3893 Text en © The Author(s) 2017 This work is licensed under a Creative Commons Attribution 4.0 International (CCCC BY 4.0) license. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
| spellingShingle | Article Bowers, Robert M Kyrpides, Nikos C Stepanauskas, Ramunas Harmon-Smith, Miranda Doud, Devin Reddy, T B K Schulz, Frederik Jarett, Jessica Rivers, Adam R Eloe-Fadrosh, Emiley A Tringe, Susannah G Ivanova, Natalia N Copeland, Alex Clum, Alicia Becraft, Eric D Malmstrom, Rex R Birren, Bruce Podar, Mircea Bork, Peer Weinstock, George M Garrity, George M Dodsworth, Jeremy A Yooseph, Shibu Sutton, Granger Glöckner, Frank O Gilbert, Jack A Nelson, William C Hallam, Steven J Jungbluth, Sean P Ettema, Thijs J G Tighe, Scott Konstantinidis, Konstantinos T Liu, Wen-Tso Baker, Brett J Rattei, Thomas Eisen, Jonathan A Hedlund, Brian McMahon, Katherine D Fierer, Noah Knight, Rob Finn, Rob Cochrane, Guy Karsch-Mizrachi, Ilene Tyson, Gene W Rinke, Christian Lapidus, Alla Meyer, Folker Yilmaz, Pelin Parks, Donovan H Murat Eren, A Schriml, Lynn Banfield, Jillian F Hugenholtz, Philip Woyke, Tanja Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea |
| title | Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea |
| title_full | Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea |
| title_fullStr | Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea |
| title_full_unstemmed | Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea |
| title_short | Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea |
| title_sort | minimum information about a single amplified genome (misag) and a metagenome-assembled genome (mimag) of bacteria and archaea |
| topic | Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6436528/ https://www.ncbi.nlm.nih.gov/pubmed/28787424 http://dx.doi.org/10.1038/nbt.3893 |
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