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Backbone (1)H, (13)C, and (15)N resonance assignments of BoMan26A, a β-mannanase of the glycoside hydrolase family 26 from the human gut bacterium Bacteroides ovatus
Bacteroides ovatus is a member of the human gut microbiota. The importance of this microbial consortium involves the degradation of complex dietary glycans mainly conferred by glycoside hydrolases. In this study we focus on one such catabolic glycoside hydrolase from B. ovatus. The enzyme, termed Bo...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6439179/ https://www.ncbi.nlm.nih.gov/pubmed/30734154 http://dx.doi.org/10.1007/s12104-019-09879-w |
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author | Wernersson, Sven Bågenholm, Viktoria Persson, Cecilia Upadhyay, Santosh Kumar Stålbrand, Henrik Akke, Mikael |
author_facet | Wernersson, Sven Bågenholm, Viktoria Persson, Cecilia Upadhyay, Santosh Kumar Stålbrand, Henrik Akke, Mikael |
author_sort | Wernersson, Sven |
collection | PubMed |
description | Bacteroides ovatus is a member of the human gut microbiota. The importance of this microbial consortium involves the degradation of complex dietary glycans mainly conferred by glycoside hydrolases. In this study we focus on one such catabolic glycoside hydrolase from B. ovatus. The enzyme, termed BoMan26A, is a β-mannanase that takes part in the hydrolytic degradation of galactomannans. The crystal structure of BoMan26A has previously been determined to reveal a TIM-barrel like fold, but the relation between the protein structure and the mode of substrate processing has not yet been studied. Here we report residue-specific assignments for 95% of the 344 backbone amides of BoMan26A. The assignments form the basis for future studies of the relationship between substrate interactions and protein dynamics. In particular, the potential role of loops adjacent to glycan binding sites is of interest for such studies. |
format | Online Article Text |
id | pubmed-6439179 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-64391792019-04-15 Backbone (1)H, (13)C, and (15)N resonance assignments of BoMan26A, a β-mannanase of the glycoside hydrolase family 26 from the human gut bacterium Bacteroides ovatus Wernersson, Sven Bågenholm, Viktoria Persson, Cecilia Upadhyay, Santosh Kumar Stålbrand, Henrik Akke, Mikael Biomol NMR Assign Article Bacteroides ovatus is a member of the human gut microbiota. The importance of this microbial consortium involves the degradation of complex dietary glycans mainly conferred by glycoside hydrolases. In this study we focus on one such catabolic glycoside hydrolase from B. ovatus. The enzyme, termed BoMan26A, is a β-mannanase that takes part in the hydrolytic degradation of galactomannans. The crystal structure of BoMan26A has previously been determined to reveal a TIM-barrel like fold, but the relation between the protein structure and the mode of substrate processing has not yet been studied. Here we report residue-specific assignments for 95% of the 344 backbone amides of BoMan26A. The assignments form the basis for future studies of the relationship between substrate interactions and protein dynamics. In particular, the potential role of loops adjacent to glycan binding sites is of interest for such studies. Springer Netherlands 2019-02-07 2019 /pmc/articles/PMC6439179/ /pubmed/30734154 http://dx.doi.org/10.1007/s12104-019-09879-w Text en © The Author(s) 2019 OpenAccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Wernersson, Sven Bågenholm, Viktoria Persson, Cecilia Upadhyay, Santosh Kumar Stålbrand, Henrik Akke, Mikael Backbone (1)H, (13)C, and (15)N resonance assignments of BoMan26A, a β-mannanase of the glycoside hydrolase family 26 from the human gut bacterium Bacteroides ovatus |
title | Backbone (1)H, (13)C, and (15)N resonance assignments of BoMan26A, a β-mannanase of the glycoside hydrolase family 26 from the human gut bacterium Bacteroides ovatus |
title_full | Backbone (1)H, (13)C, and (15)N resonance assignments of BoMan26A, a β-mannanase of the glycoside hydrolase family 26 from the human gut bacterium Bacteroides ovatus |
title_fullStr | Backbone (1)H, (13)C, and (15)N resonance assignments of BoMan26A, a β-mannanase of the glycoside hydrolase family 26 from the human gut bacterium Bacteroides ovatus |
title_full_unstemmed | Backbone (1)H, (13)C, and (15)N resonance assignments of BoMan26A, a β-mannanase of the glycoside hydrolase family 26 from the human gut bacterium Bacteroides ovatus |
title_short | Backbone (1)H, (13)C, and (15)N resonance assignments of BoMan26A, a β-mannanase of the glycoside hydrolase family 26 from the human gut bacterium Bacteroides ovatus |
title_sort | backbone (1)h, (13)c, and (15)n resonance assignments of boman26a, a β-mannanase of the glycoside hydrolase family 26 from the human gut bacterium bacteroides ovatus |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6439179/ https://www.ncbi.nlm.nih.gov/pubmed/30734154 http://dx.doi.org/10.1007/s12104-019-09879-w |
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