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Evolthon: A community endeavor to evolve lab evolution

In experimental evolution, scientists evolve organisms in the lab, typically by challenging them to new environmental conditions. How best to evolve a desired trait? Should the challenge be applied abruptly, gradually, periodically, sporadically? Should one apply chemical mutagenesis, and do strains...

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Autores principales: Kaminski Strauss, Sivan, Schirman, Dvir, Jona, Ghil, Brooks, Aaron N., Kunjapur, Aditya M., Nguyen Ba, Alex N., Flint, Alice, Solt, Andras, Mershin, Andreas, Dixit, Atray, Yona, Avihu H., Csörgő, Bálint, Busby, Bede Phillip, Hennig, Bianca P., Pál, Csaba, Schraivogel, Daniel, Schultz, Daniel, Wernick, David G., Agashe, Deepa, Levi, Dikla, Zabezhinsky, Dmitry, Russ, Dor, Sass, Ehud, Tamar, Einat, Herz, Elad, Levy, Emmanuel D., Church, George M., Yelin, Idan, Nachman, Iftach, Gerst, Jeffrey E., Georgeson, Joseph M., Adamala, Katarzyna P., Steinmetz, Lars M., Rübsam, Marc, Ralser, Markus, Klutstein, Michael, Desai, Michael M., Walunjkar, Nilima, Yin, Ning, Aharon Hefetz, Noa, Jakimo, Noah, Snitser, Olga, Adini, Omri, Kumar, Prashant, Soo Hoo Smith, Rachel, Zeidan, Razi, Hazan, Ronen, Rak, Roni, Kishony, Roy, Johnson, Shannon, Nouriel, Shira, Vonesch, Sibylle C., Foster, Simmie, Dagan, Tal, Wein, Tanita, Karydis, Thrasyvoulos, Wannier, Timothy M., Stiles, Timothy, Olin-Sandoval, Viridiana, Mueller, William F., Bar-On, Yinon M., Dahan, Orna, Pilpel, Yitzhak
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6440615/
https://www.ncbi.nlm.nih.gov/pubmed/30925180
http://dx.doi.org/10.1371/journal.pbio.3000182
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author Kaminski Strauss, Sivan
Schirman, Dvir
Jona, Ghil
Brooks, Aaron N.
Kunjapur, Aditya M.
Nguyen Ba, Alex N.
Flint, Alice
Solt, Andras
Mershin, Andreas
Dixit, Atray
Yona, Avihu H.
Csörgő, Bálint
Busby, Bede Phillip
Hennig, Bianca P.
Pál, Csaba
Schraivogel, Daniel
Schultz, Daniel
Wernick, David G.
Agashe, Deepa
Levi, Dikla
Zabezhinsky, Dmitry
Russ, Dor
Sass, Ehud
Tamar, Einat
Herz, Elad
Levy, Emmanuel D.
Church, George M.
Yelin, Idan
Nachman, Iftach
Gerst, Jeffrey E.
Georgeson, Joseph M.
Adamala, Katarzyna P.
Steinmetz, Lars M.
Rübsam, Marc
Ralser, Markus
Klutstein, Michael
Desai, Michael M.
Walunjkar, Nilima
Yin, Ning
Aharon Hefetz, Noa
Jakimo, Noah
Snitser, Olga
Adini, Omri
Kumar, Prashant
Soo Hoo Smith, Rachel
Zeidan, Razi
Hazan, Ronen
Rak, Roni
Kishony, Roy
Johnson, Shannon
Nouriel, Shira
Vonesch, Sibylle C.
Foster, Simmie
Dagan, Tal
Wein, Tanita
Karydis, Thrasyvoulos
Wannier, Timothy M.
Stiles, Timothy
Olin-Sandoval, Viridiana
Mueller, William F.
Bar-On, Yinon M.
Dahan, Orna
Pilpel, Yitzhak
author_facet Kaminski Strauss, Sivan
Schirman, Dvir
Jona, Ghil
Brooks, Aaron N.
Kunjapur, Aditya M.
Nguyen Ba, Alex N.
Flint, Alice
Solt, Andras
Mershin, Andreas
Dixit, Atray
Yona, Avihu H.
Csörgő, Bálint
Busby, Bede Phillip
Hennig, Bianca P.
Pál, Csaba
Schraivogel, Daniel
Schultz, Daniel
Wernick, David G.
Agashe, Deepa
Levi, Dikla
Zabezhinsky, Dmitry
Russ, Dor
Sass, Ehud
Tamar, Einat
Herz, Elad
Levy, Emmanuel D.
Church, George M.
Yelin, Idan
Nachman, Iftach
Gerst, Jeffrey E.
Georgeson, Joseph M.
Adamala, Katarzyna P.
Steinmetz, Lars M.
Rübsam, Marc
Ralser, Markus
Klutstein, Michael
Desai, Michael M.
Walunjkar, Nilima
Yin, Ning
Aharon Hefetz, Noa
Jakimo, Noah
Snitser, Olga
Adini, Omri
Kumar, Prashant
Soo Hoo Smith, Rachel
Zeidan, Razi
Hazan, Ronen
Rak, Roni
Kishony, Roy
Johnson, Shannon
Nouriel, Shira
Vonesch, Sibylle C.
Foster, Simmie
Dagan, Tal
Wein, Tanita
Karydis, Thrasyvoulos
Wannier, Timothy M.
Stiles, Timothy
Olin-Sandoval, Viridiana
Mueller, William F.
Bar-On, Yinon M.
Dahan, Orna
Pilpel, Yitzhak
author_sort Kaminski Strauss, Sivan
collection PubMed
description In experimental evolution, scientists evolve organisms in the lab, typically by challenging them to new environmental conditions. How best to evolve a desired trait? Should the challenge be applied abruptly, gradually, periodically, sporadically? Should one apply chemical mutagenesis, and do strains with high innate mutation rate evolve faster? What are ideal population sizes of evolving populations? There are endless strategies, beyond those that can be exposed by individual labs. We therefore arranged a community challenge, Evolthon, in which students and scientists from different labs were asked to evolve Escherichia coli or Saccharomyces cerevisiae for an abiotic stress—low temperature. About 30 participants from around the world explored diverse environmental and genetic regimes of evolution. After a period of evolution in each lab, all strains of each species were competed with one another. In yeast, the most successful strategies were those that used mating, underscoring the importance of sex in evolution. In bacteria, the fittest strain used a strategy based on exploration of different mutation rates. Different strategies displayed variable levels of performance and stability across additional challenges and conditions. This study therefore uncovers principles of effective experimental evolutionary regimens and might prove useful also for biotechnological developments of new strains and for understanding natural strategies in evolutionary arms races between species. Evolthon constitutes a model for community-based scientific exploration that encourages creativity and cooperation.
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spelling pubmed-64406152019-04-12 Evolthon: A community endeavor to evolve lab evolution Kaminski Strauss, Sivan Schirman, Dvir Jona, Ghil Brooks, Aaron N. Kunjapur, Aditya M. Nguyen Ba, Alex N. Flint, Alice Solt, Andras Mershin, Andreas Dixit, Atray Yona, Avihu H. Csörgő, Bálint Busby, Bede Phillip Hennig, Bianca P. Pál, Csaba Schraivogel, Daniel Schultz, Daniel Wernick, David G. Agashe, Deepa Levi, Dikla Zabezhinsky, Dmitry Russ, Dor Sass, Ehud Tamar, Einat Herz, Elad Levy, Emmanuel D. Church, George M. Yelin, Idan Nachman, Iftach Gerst, Jeffrey E. Georgeson, Joseph M. Adamala, Katarzyna P. Steinmetz, Lars M. Rübsam, Marc Ralser, Markus Klutstein, Michael Desai, Michael M. Walunjkar, Nilima Yin, Ning Aharon Hefetz, Noa Jakimo, Noah Snitser, Olga Adini, Omri Kumar, Prashant Soo Hoo Smith, Rachel Zeidan, Razi Hazan, Ronen Rak, Roni Kishony, Roy Johnson, Shannon Nouriel, Shira Vonesch, Sibylle C. Foster, Simmie Dagan, Tal Wein, Tanita Karydis, Thrasyvoulos Wannier, Timothy M. Stiles, Timothy Olin-Sandoval, Viridiana Mueller, William F. Bar-On, Yinon M. Dahan, Orna Pilpel, Yitzhak PLoS Biol Community Page In experimental evolution, scientists evolve organisms in the lab, typically by challenging them to new environmental conditions. How best to evolve a desired trait? Should the challenge be applied abruptly, gradually, periodically, sporadically? Should one apply chemical mutagenesis, and do strains with high innate mutation rate evolve faster? What are ideal population sizes of evolving populations? There are endless strategies, beyond those that can be exposed by individual labs. We therefore arranged a community challenge, Evolthon, in which students and scientists from different labs were asked to evolve Escherichia coli or Saccharomyces cerevisiae for an abiotic stress—low temperature. About 30 participants from around the world explored diverse environmental and genetic regimes of evolution. After a period of evolution in each lab, all strains of each species were competed with one another. In yeast, the most successful strategies were those that used mating, underscoring the importance of sex in evolution. In bacteria, the fittest strain used a strategy based on exploration of different mutation rates. Different strategies displayed variable levels of performance and stability across additional challenges and conditions. This study therefore uncovers principles of effective experimental evolutionary regimens and might prove useful also for biotechnological developments of new strains and for understanding natural strategies in evolutionary arms races between species. Evolthon constitutes a model for community-based scientific exploration that encourages creativity and cooperation. Public Library of Science 2019-03-29 /pmc/articles/PMC6440615/ /pubmed/30925180 http://dx.doi.org/10.1371/journal.pbio.3000182 Text en © 2019 Kaminski Strauss et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Community Page
Kaminski Strauss, Sivan
Schirman, Dvir
Jona, Ghil
Brooks, Aaron N.
Kunjapur, Aditya M.
Nguyen Ba, Alex N.
Flint, Alice
Solt, Andras
Mershin, Andreas
Dixit, Atray
Yona, Avihu H.
Csörgő, Bálint
Busby, Bede Phillip
Hennig, Bianca P.
Pál, Csaba
Schraivogel, Daniel
Schultz, Daniel
Wernick, David G.
Agashe, Deepa
Levi, Dikla
Zabezhinsky, Dmitry
Russ, Dor
Sass, Ehud
Tamar, Einat
Herz, Elad
Levy, Emmanuel D.
Church, George M.
Yelin, Idan
Nachman, Iftach
Gerst, Jeffrey E.
Georgeson, Joseph M.
Adamala, Katarzyna P.
Steinmetz, Lars M.
Rübsam, Marc
Ralser, Markus
Klutstein, Michael
Desai, Michael M.
Walunjkar, Nilima
Yin, Ning
Aharon Hefetz, Noa
Jakimo, Noah
Snitser, Olga
Adini, Omri
Kumar, Prashant
Soo Hoo Smith, Rachel
Zeidan, Razi
Hazan, Ronen
Rak, Roni
Kishony, Roy
Johnson, Shannon
Nouriel, Shira
Vonesch, Sibylle C.
Foster, Simmie
Dagan, Tal
Wein, Tanita
Karydis, Thrasyvoulos
Wannier, Timothy M.
Stiles, Timothy
Olin-Sandoval, Viridiana
Mueller, William F.
Bar-On, Yinon M.
Dahan, Orna
Pilpel, Yitzhak
Evolthon: A community endeavor to evolve lab evolution
title Evolthon: A community endeavor to evolve lab evolution
title_full Evolthon: A community endeavor to evolve lab evolution
title_fullStr Evolthon: A community endeavor to evolve lab evolution
title_full_unstemmed Evolthon: A community endeavor to evolve lab evolution
title_short Evolthon: A community endeavor to evolve lab evolution
title_sort evolthon: a community endeavor to evolve lab evolution
topic Community Page
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6440615/
https://www.ncbi.nlm.nih.gov/pubmed/30925180
http://dx.doi.org/10.1371/journal.pbio.3000182
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