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Precision immunoprofiling by image analysis and artificial intelligence

Clinical success of immunotherapy is driving the need for new prognostic and predictive assays to inform patient selection and stratification. This requirement can be met by a combination of computational pathology and artificial intelligence. Here, we critically assess computational approaches supp...

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Autores principales: Koelzer, Viktor H., Sirinukunwattana, Korsuk, Rittscher, Jens, Mertz, Kirsten D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6447694/
https://www.ncbi.nlm.nih.gov/pubmed/30470933
http://dx.doi.org/10.1007/s00428-018-2485-z
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author Koelzer, Viktor H.
Sirinukunwattana, Korsuk
Rittscher, Jens
Mertz, Kirsten D.
author_facet Koelzer, Viktor H.
Sirinukunwattana, Korsuk
Rittscher, Jens
Mertz, Kirsten D.
author_sort Koelzer, Viktor H.
collection PubMed
description Clinical success of immunotherapy is driving the need for new prognostic and predictive assays to inform patient selection and stratification. This requirement can be met by a combination of computational pathology and artificial intelligence. Here, we critically assess computational approaches supporting the development of a standardized methodology in the assessment of immune-oncology biomarkers, such as PD-L1 and immune cell infiltrates. We examine immunoprofiling through spatial analysis of tumor-immune cell interactions and multiplexing technologies as a predictor of patient response to cancer treatment. Further, we discuss how integrated bioinformatics can enable the amalgamation of complex morphological phenotypes with the multiomics datasets that drive precision medicine. We provide an outline to machine learning (ML) and artificial intelligence tools and illustrate fields of application in immune-oncology, such as pattern-recognition in large and complex datasets and deep learning approaches for survival analysis. Synergies of surgical pathology and computational analyses are expected to improve patient stratification in immuno-oncology. We propose that future clinical demands will be best met by (1) dedicated research at the interface of pathology and bioinformatics, supported by professional societies, and (2) the integration of data sciences and digital image analysis in the professional education of pathologists.
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spelling pubmed-64476942019-04-17 Precision immunoprofiling by image analysis and artificial intelligence Koelzer, Viktor H. Sirinukunwattana, Korsuk Rittscher, Jens Mertz, Kirsten D. Virchows Arch Review Article Clinical success of immunotherapy is driving the need for new prognostic and predictive assays to inform patient selection and stratification. This requirement can be met by a combination of computational pathology and artificial intelligence. Here, we critically assess computational approaches supporting the development of a standardized methodology in the assessment of immune-oncology biomarkers, such as PD-L1 and immune cell infiltrates. We examine immunoprofiling through spatial analysis of tumor-immune cell interactions and multiplexing technologies as a predictor of patient response to cancer treatment. Further, we discuss how integrated bioinformatics can enable the amalgamation of complex morphological phenotypes with the multiomics datasets that drive precision medicine. We provide an outline to machine learning (ML) and artificial intelligence tools and illustrate fields of application in immune-oncology, such as pattern-recognition in large and complex datasets and deep learning approaches for survival analysis. Synergies of surgical pathology and computational analyses are expected to improve patient stratification in immuno-oncology. We propose that future clinical demands will be best met by (1) dedicated research at the interface of pathology and bioinformatics, supported by professional societies, and (2) the integration of data sciences and digital image analysis in the professional education of pathologists. Springer Berlin Heidelberg 2018-11-23 2019 /pmc/articles/PMC6447694/ /pubmed/30470933 http://dx.doi.org/10.1007/s00428-018-2485-z Text en © The Author(s) 2018 https://creativecommons.org/licenses/by/4.0/Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Review Article
Koelzer, Viktor H.
Sirinukunwattana, Korsuk
Rittscher, Jens
Mertz, Kirsten D.
Precision immunoprofiling by image analysis and artificial intelligence
title Precision immunoprofiling by image analysis and artificial intelligence
title_full Precision immunoprofiling by image analysis and artificial intelligence
title_fullStr Precision immunoprofiling by image analysis and artificial intelligence
title_full_unstemmed Precision immunoprofiling by image analysis and artificial intelligence
title_short Precision immunoprofiling by image analysis and artificial intelligence
title_sort precision immunoprofiling by image analysis and artificial intelligence
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6447694/
https://www.ncbi.nlm.nih.gov/pubmed/30470933
http://dx.doi.org/10.1007/s00428-018-2485-z
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